Dlon009139.1
Basic Information
- Insect
- Diachasmimorpha longicaudata
- Gene Symbol
- -
- Assembly
- GCA_034640455.1
- Location
- CM067954.1:6960724-6962776[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.18 14 6.4 0.1 3 23 113 134 111 134 0.93 2 15 0.023 1.8 9.2 0.2 2 23 139 161 138 161 0.94 3 15 1.9 1.5e+02 3.2 0.0 3 23 211 231 210 231 0.92 4 15 0.037 3 8.5 0.5 2 23 237 259 236 259 0.94 5 15 0.11 8.8 7.0 0.7 3 20 271 288 269 289 0.93 6 15 9.3e-05 0.0075 16.7 4.8 1 23 295 318 295 318 0.97 7 15 0.12 10 6.9 3.2 1 23 331 353 331 353 0.96 8 15 0.024 1.9 9.1 0.1 3 23 363 384 361 384 0.93 9 15 9.8e-07 7.9e-05 22.9 0.9 1 23 390 412 390 412 0.98 10 15 0.034 2.7 8.7 0.3 2 23 416 438 415 438 0.93 11 15 5.8e-05 0.0046 17.4 2.3 1 23 448 470 448 470 0.97 12 15 0.0014 0.11 13.0 1.1 1 23 476 498 476 498 0.97 13 15 7e-05 0.0056 17.1 2.1 1 20 503 522 503 523 0.96 14 15 0.00014 0.011 16.1 5.4 1 23 533 555 533 555 0.98 15 15 0.52 42 4.9 2.0 1 23 561 584 561 584 0.89
Sequence Information
- Coding Sequence
- ATGGATTCAACTGTTGTTGAAACTACGTGCAGATTGTGCGCTGATcgtggaaataataattatgcaattttcaCGTCTGATTCGTATTCCATCGctgataaaatcaataattgtttGCCAATAGTGATAAGTCCAGATGACGGTTTGCCATCGCACATTTGCCCTCCCTGTCTGAACGACCTGAACATCTCGCACAGTCTCCGGCAGAGATGTCTCCAGACGGACGGAATATTGCGACAGCAAATGACAGTTGTCATGATCGATGGAATCAAACAGGAGAAAAATTTCGAGGCTGAGAACGAGGAGACAGACGGTGATCCGTCTGACTCCCTTTTCTGCGGCATCTGCGAAGCCAATTTCCCCGATATAAACACCTTCGACAAGCACATGGAGCAGTACCATGCCTCCGAGTGGATCTGCAACCTGTGTCAGGCGGATTTCCAAACGTCGGAGGAATTGCTGCAGCACAAGTACACAAATCACTACGATAGCACGGATAATCTGGAGATGAGGCACGTGGATTCCGATGTCTCCGAGGATCAGTCGGACAACGAGGAGTCTATTGACATCAAGGAGGAGGACGTAGCATTAAATTGTCGGAAAATTCTGGAGAAAGAAAAACCCGTGGCCTGCGATATCTGCGGCGTGATGATTGAGACAGAGAATTATATGGCTCTGCATGTAAAATTTCACCAGCCACGCTCCATGTACTGCTCCACATGCGATCGCCTGTACCAATCGCCGTACGAGCTCTTTCTTCACAAGCAGAACGTCCACAAGGGCTTCGTCAATCAGAAAATGAAGTGGTTCTGCGAGAACTGCGAGAGATTCAGCTCAAATcccagatttttaaaaaaacatgaaaactgcGGAAAGGCCAAGTTCAAGTGTAAATACTGCCAGGAGGAGTTCACGAAGCAAAAGCAATTTTTGAGACATCAGAGCAAAAATCATTACGACAAGATGTTCACTGATCCTGATGTGATCAAGTTCAAATGCCCGACCTGTGAGAAGCTCTTCATTGAGAGGAGCTCCTACAGTTGTCATGTCAGGCAACATCGGTTGAGGGTCGAGAGGAAATATGGTTGCGAGGAGTGCGATGCGAGTTTTTTGAGCTCCACGCAGCTCAAGGGCCACATGGAGGACATACACGTGAGACGGAGGGACTACAAGTGCAATAGCTGTGGAAAAGCGTTCACTAGCAGTCGGAGTCTGAAAGCCCACGAGATAAGACACATAAGTCAGACGTGTCGAGAGTGCGGAGAACAATTTGAAAATACTCGAATCCTCCAGAAGCACCTGCTGGAAATCCACAGTATCACCACCCCCGCGACGGGGAAGCACAGCTGCAAAGAATgtgggaaaaaatttccaaagctGAGGCTCCTGCAGGATCACAAGAATATTCATTCTGGAAAACGGCCCCATGTTTGTGATATTTGTAAAGAGACCTTCAGGACTTACGCCGCGAGATGgtcgcatgtgcagaagcatAAAAATGGAGGATTTTACTGCGATTACTGTCAACGAAAGTTTTCAACAAAAGGTCACGTTCGTCGTCACTTGGTCTGTCATCTACCTCCCGAGGACTGGAAGTACGAGTGTGAAATCTGCCACCAGAGATTCCAGAGGAAATCCCACTTAGACACTCACGCGAAAAAACACAACGACACTCGTCCCTATCAGTGCGACATGTGTGACGCTAGATTTCTCAAAGATAAATTTCTTTTGCAGCACAAAAAACGACGGCACAACGAGCCTCCGCCGAAGAGGATTCGAATCAAAGTTTACCCCCAAAATTTATTGTAA
- Protein Sequence
- MDSTVVETTCRLCADRGNNNYAIFTSDSYSIADKINNCLPIVISPDDGLPSHICPPCLNDLNISHSLRQRCLQTDGILRQQMTVVMIDGIKQEKNFEAENEETDGDPSDSLFCGICEANFPDINTFDKHMEQYHASEWICNLCQADFQTSEELLQHKYTNHYDSTDNLEMRHVDSDVSEDQSDNEESIDIKEEDVALNCRKILEKEKPVACDICGVMIETENYMALHVKFHQPRSMYCSTCDRLYQSPYELFLHKQNVHKGFVNQKMKWFCENCERFSSNPRFLKKHENCGKAKFKCKYCQEEFTKQKQFLRHQSKNHYDKMFTDPDVIKFKCPTCEKLFIERSSYSCHVRQHRLRVERKYGCEECDASFLSSTQLKGHMEDIHVRRRDYKCNSCGKAFTSSRSLKAHEIRHISQTCRECGEQFENTRILQKHLLEIHSITTPATGKHSCKECGKKFPKLRLLQDHKNIHSGKRPHVCDICKETFRTYAARWSHVQKHKNGGFYCDYCQRKFSTKGHVRRHLVCHLPPEDWKYECEICHQRFQRKSHLDTHAKKHNDTRPYQCDMCDARFLKDKFLLQHKKRRHNEPPPKRIRIKVYPQNLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00438281; iTF_01274003; iTF_01273297;
- 90% Identity
- -
- 80% Identity
- -