Basic Information

Insect: Psyttalia lounsburyi
Gene Symbol: PRDM5_1
Assembly: GCA_030522865.1
Location: JAPYZN010001884.1:1288-5988[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00011 0.018 16.4 0.4 3 23 760 780 758 780 0.97

2 17 0.57 94 4.7 0.4 1 19 786 804 786 806 0.81

3 17 0.66 1.1e+02 4.5 0.8 2 23 813 834 812 834 0.95

4 17 4.4e-05 0.0074 17.7 1.2 3 23 843 864 842 864 0.98

5 17 0.018 2.9 9.5 1.8 1 23 871 894 871 894 0.94

6 17 9e-05 0.015 16.7 0.7 1 23 900 923 900 923 0.94

7 17 0.067 11 7.7 1.0 2 23 931 951 931 951 0.96

8 17 6e-07 0.0001 23.5 2.3 2 23 957 978 956 978 0.97

9 17 2.1e-06 0.00035 21.8 0.2 1 23 984 1006 984 1006 0.99

10 17 0.0041 0.68 11.5 2.8 2 23 1018 1040 1017 1040 0.95

11 17 1.8 3e+02 3.2 0.9 1 23 1046 1069 1046 1069 0.81

12 17 0.027 4.5 8.9 2.9 2 23 1091 1113 1090 1113 0.95

13 17 0.0004 0.067 14.6 1.0 2 23 1120 1142 1119 1142 0.96

14 17 3.8e-05 0.0064 17.9 1.7 2 23 1150 1171 1149 1171 0.97

15 17 0.0017 0.28 12.7 2.4 1 23 1177 1200 1177 1200 0.96

16 17 0.31 52 5.6 3.2 2 23 1207 1228 1206 1228 0.96

17 17 0.23 39 6.0 1.3 1 23 1234 1256 1234 1256 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00011	0.018	16.4	0.4	3	23	760	780	758	780	0.97
2	17	0.57	94	4.7	0.4	1	19	786	804	786	806	0.81
3	17	0.66	1.1e+02	4.5	0.8	2	23	813	834	812	834	0.95
4	17	4.4e-05	0.0074	17.7	1.2	3	23	843	864	842	864	0.98
5	17	0.018	2.9	9.5	1.8	1	23	871	894	871	894	0.94
6	17	9e-05	0.015	16.7	0.7	1	23	900	923	900	923	0.94
7	17	0.067	11	7.7	1.0	2	23	931	951	931	951	0.96
8	17	6e-07	0.0001	23.5	2.3	2	23	957	978	956	978	0.97
9	17	2.1e-06	0.00035	21.8	0.2	1	23	984	1006	984	1006	0.99
10	17	0.0041	0.68	11.5	2.8	2	23	1018	1040	1017	1040	0.95
11	17	1.8	3e+02	3.2	0.9	1	23	1046	1069	1046	1069	0.81
12	17	0.027	4.5	8.9	2.9	2	23	1091	1113	1090	1113	0.95
13	17	0.0004	0.067	14.6	1.0	2	23	1120	1142	1119	1142	0.96
14	17	3.8e-05	0.0064	17.9	1.7	2	23	1150	1171	1149	1171	0.97
15	17	0.0017	0.28	12.7	2.4	1	23	1177	1200	1177	1200	0.96
16	17	0.31	52	5.6	3.2	2	23	1207	1228	1206	1228	0.96
17	17	0.23	39	6.0	1.3	1	23	1234	1256	1234	1256	0.92

Sequence Information

Coding Sequence: ATGAGTGACCAAACTGAGACTATGATATTTATTAGTGAcaagaataatgaaaattcgaGGGAGGAGACTGGGAAAAGTGTGATTTATTCCTTCGATGATAATGTAGAACTTGGAGGGGCCGAGCGGAAGAGTAAGGAGGACAATGGAAATGTTTCTGGAGATGCCAAGTCAATTGTCATGCAGACCTATAAGAGATTACCATCAGCTGTCGATCCATCTCCACTGGCTAAAGGTGACCACAATTACAGCGACAGCCAGCCCATCCCCGAGAAGTCCATGTGCCAAATAAAAACGCTGAGCGATTTGAAGAAAGTCACGCCGAAAGTCAAGCTCTTCGCCCCCGAGATCAAAACCCTCAACGAGTTCTCGAAACACTCGCAGTCCTCAAAAGACACTCGAGCACAGCTGAGGACCTACTGCAGGACCTGCGCAGGCCTAAAAATTCCCCTGGTGGACATCTTCAGTGAGAGGGGGGTTCAGATGCGCCTGAACCAGCAGATGAAGCACCTGGAGGAGATCGACGAGCACGACGGTCTCTCCACGCATATGTGCATGGACTGTATCTGCGACTTGAAGATGAGTTACAAGTTCTTCATGCAGATAAAGAAGGCACAGGTCAAGCTAAAGTCGTTAGTAAGCATCCCTATAAATGAGGAAAAGCAACGAGTTGCGACGATTTCTGAGATTCCAAAAAAGAAGTCTTCAATTGAGACACTAAAACCCCTAAATGAACCGACCAAGCCAATCGGGCCAATTGAACCACCAATTGAGATAATTAAACCGCCAAGGGAACCTCCAAAGGAACCTCCAAGGGAAACTCCAAGGGAACCTCCAAGGGAATCTCCAAGAGAACCTCCAAGGGAACCTCCAAGGGAACCTCCAAGGGAACCTCCAAGTAAACCTATTGAAGAACCGACTGATCCACCGGTACCCGTCGCTCAACCAACATCTCCAGCTCCGCCCTCTCCTCCCCCAGCTTCTGACAATGATTCCATCGAGGAATTTGACCCTGACGACTGTCCAATGGACAATGATCCTTTAGAATTAGTAGACGATAAATCAGACGAGCCGGAGgctccaaaaaaatctgaagcCCCGAACGAACCTCAAGAGCCAGAACCCCCTAAAAAATCATCTCCAAGAGCCTCGGAGCCAGAAGATCCTCCCCAACCAGTACTAAAGTCAGAGACAGTTTATCAGTACGATACCGAGTTGAACACTTACATAAAAATAGAGCCCAAGAGCCATCCCCCAGTACCCGACCCCAAGGACTCAGAAGACGTAGTGAAATCGGTGGTAAAGTTAGGGGACTCGGATCAGAAGAAGAACCTTCTAAAAAGGAAAGCGCCGACCTTAGGGAGGGATTCCCTGGACTCCCTGAGCGCTTCAGAGTCCGACTCTTTGAAGAAATGCGTGAACGATCCGAAGCTCCAGAAGTTGATGGGAAAACCCTTGAACGTGTCCCCCTCGAATGAAGAGGGGATCATGTACGTGACTGTCAAAGGACCAAAACCAAACGAGCTTCTGCTCGTAAAAGTCAAGAAGATGGAGAAGAACGCAGACAAAAAGGAGGAGGTCAAGCCGTTAATCTTGAAGAAGCCCAATGATCTGGGATCCTTGAAGTCAGTCGAGAAAGCCCTGAAGGCTTTACCTTTACCACTGCCTTTTAAATCCCCGGAGTCCCCGAAGAAATGTGAGAACACTCGGGATGCGATTATTGAGGAGCAAATAGAGCAGTACAAGAAGAAGCGAGAGCAGATTCTGGGGGGCACCGCAGGTCTCCCCAATGCTTTAAAATTTGAGGATGGAGCTGTGAGGTTTGTCAATCCAGTCCAGGGTCTCTCAGAAATAGACGACGCAAAATATGACTCGAGTGATGAGTCAAGGGAGAGGATCAAATTTAGGACATACAGCTCCATTGAGACTGATAAAAATCGTCCTTTATCCACTAAAGAGTATCTAGCAAAATTTGCCAGGCTCAAGCGGAAGTGGGAGGAGGCGAAAGCTAAGAAGGCGGCCCTGCAGGAGGAGCTCAATGCCTCCTACAACGAGGGAAATCTCGAGAAGTTGACGAGAATCTTGGGAGAAAGGGAGAAGAACTTGCACAACTTCCAGGAATACTTGAGACAGAGGAAGATCGTGATAACAAAGCTGAAGGACGAGGATATAATATCGCTCTACGAAGGGAGGAATACAACAGACGTCAAGAATAAGTTTCCAGATCTGATTGACGAGGAGATGCCTGTGGACGGACTGACAGACATCGACTTCTTGGATTGCGACTACTGTAGCCAGACATTTTCCTCCCGTGATGTCCTTGAAGATCATCTGAAGACCCACGACTACAAGATCCACTACTTCTGCGAGGACTGCGGTGAGGAATTCTTTACCATTAAGGCCAAGAGGTCTCACAATGTCACATGCATCAAGAAACTCATCTGCAAGTATTGCGACTTGATGCTTGAGTCTAGGGGGAAGAAGAGGCAGCACGAGCAGAAGCACTGCGACGCAATTTATGGACAGCTCTGTGACATATGCGGCGAGAAGTTCAAGCATCAGGGTACCTTGGACCAGCACATCAAGACCCAGCACATGAGTTGGGAGAAGGTGTTCGAGTGTCCCAAGTGTGAGAAGAAATTCGCATTCAGACAGAAATTGAGTTTCCATTTGAAGTCAGTTCATACGACTATGAGAGCGTATTTGTGTGAGGATTGTGGAGCGGATTTCAAGAATCCTGCATCATTGAGGCACCACAGGATCCGAAAGCATCAACCAACTGGGAACAAGCGGGAGTGCCCGGTCTGCCACAAGATGGTGCCTTTCTACAGTCTCTCAAAGCATATGTATACGCATAAAGCCTATACCATTCAGTGCCCACACTGCGACAAGATGTTTAAAAATACTTCGACGTTGAAGCAGCACGTGAGGATTCACGAAGACCAGAGGCAGTACCGCTGCGACACGTGTGGAGTGGGATTCAATAGGAGGGACGGGCTGAGGCTGCACATGAGGGTACACCAGAAGACCGACAGCCGAGCGTTGAAGGAGTGCTCGTGTCAGATTTGCTCCGAGAAATTCCCGAACCACTCGATGCTGGTGATACACAGGAACCGGGTGCACAAGGATGGCAAACAGTACACCTGTCAAATTTGTAATAGGTCGATGCTGTCGACGAGATCGCTCGACTGGCACATGTCGCATATTCACAATCAAACGCCACCGGGTAATTCTAAGCAGGAGGGGGACAGCAGTAGTGAGAAGAAACGGGTGACTTGCAATCACTGCTTGAAGACTTTCAAGACCGAGATGATATTGAGGACGCATATCAAGAATACGCATATGGAGAAAAATCCAGTCAAGTGTTTGGACTGCGAGGAGACGTTCACGTCGGAGGTGAGACTCAGGCATCACATGATGGTGACGCACAACAGATTAGAGGGCACACTGACCTGTCCTCACTGTCCGAAGCGCTTCGTCAATCAACTGAGACTGAAGACCCACATGATATCGCACTCTGAGGACAGGCCCTTCACCTGTGAAATATGTGGGTTCAATCTTAAGACTAAGATACAGCTGATCAAGCATCATCAGAACAGGCACAGCGATGAACGACCTTTGCAGTGCAGATACTGTCCCTGGAGGTGTAAGCAAGTGTCGGCTCTCGTGTGCCATGAGAGAACTCACACAAATGAGCGACCGTACGCCTGTATTGTCTGTAAACAACGGTTTAAGTATCTTGGAGATAAGAACAAGCACGAGAGGAGGCATGAGAGTTTAGGTGGTTCTGGCTTCAAGAGAATCGTCACCGGACGAAATGCGAAGAAGGGCGAGGGGGATGAGGACACTTCGGAGGAGCAGGAGCAGGAGCAAGAGCAGGAGATTGAATTGGAGATGGATCAGGACCAGTTTGAGATTGAAGGGGAACTTGGAGAGGAGTTCGAGGAAGGGGAGGAGTTTGATACGGAAGAGCAGATTGTCAAGTTCGAGGCTCAGGAGATCGAGGGGGAGTATGAGCAGGAGTACCAGCAGGAGTACGAGGAGACCTCCAGGGAGGCTTCAGAGGCAGCTGAGGTGATTATGAGCATGGAGGATACCACTGTCTACACGGAAGAGGTCACCGCTGAGAATATTGAGGGGGCTGAGATGATTACTGATGATATCATGACCAGCCAGATACTCCAGAGTGGGACGGTCGTGCATATTCAGCAGCAGGATGATGATGGCAAGATTCAGGTCATTCCTGTCATGCTTTCCTTGCCGGATCTCTCGGAGGGGGGCTCAGAGGTCAATCTTGCAACTGCATCTATCATGTATAATAGTGGATAG
Protein Sequence: MSDQTETMIFISDKNNENSREETGKSVIYSFDDNVELGGAERKSKEDNGNVSGDAKSIVMQTYKRLPSAVDPSPLAKGDHNYSDSQPIPEKSMCQIKTLSDLKKVTPKVKLFAPEIKTLNEFSKHSQSSKDTRAQLRTYCRTCAGLKIPLVDIFSERGVQMRLNQQMKHLEEIDEHDGLSTHMCMDCICDLKMSYKFFMQIKKAQVKLKSLVSIPINEEKQRVATISEIPKKKSSIETLKPLNEPTKPIGPIEPPIEIIKPPREPPKEPPRETPREPPRESPREPPREPPREPPREPPSKPIEEPTDPPVPVAQPTSPAPPSPPPASDNDSIEEFDPDDCPMDNDPLELVDDKSDEPEAPKKSEAPNEPQEPEPPKKSSPRASEPEDPPQPVLKSETVYQYDTELNTYIKIEPKSHPPVPDPKDSEDVVKSVVKLGDSDQKKNLLKRKAPTLGRDSLDSLSASESDSLKKCVNDPKLQKLMGKPLNVSPSNEEGIMYVTVKGPKPNELLLVKVKKMEKNADKKEEVKPLILKKPNDLGSLKSVEKALKALPLPLPFKSPESPKKCENTRDAIIEEQIEQYKKKREQILGGTAGLPNALKFEDGAVRFVNPVQGLSEIDDAKYDSSDESRERIKFRTYSSIETDKNRPLSTKEYLAKFARLKRKWEEAKAKKAALQEELNASYNEGNLEKLTRILGEREKNLHNFQEYLRQRKIVITKLKDEDIISLYEGRNTTDVKNKFPDLIDEEMPVDGLTDIDFLDCDYCSQTFSSRDVLEDHLKTHDYKIHYFCEDCGEEFFTIKAKRSHNVTCIKKLICKYCDLMLESRGKKRQHEQKHCDAIYGQLCDICGEKFKHQGTLDQHIKTQHMSWEKVFECPKCEKKFAFRQKLSFHLKSVHTTMRAYLCEDCGADFKNPASLRHHRIRKHQPTGNKRECPVCHKMVPFYSLSKHMYTHKAYTIQCPHCDKMFKNTSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHQKTDSRALKECSCQICSEKFPNHSMLVIHRNRVHKDGKQYTCQICNRSMLSTRSLDWHMSHIHNQTPPGNSKQEGDSSSEKKRVTCNHCLKTFKTEMILRTHIKNTHMEKNPVKCLDCEETFTSEVRLRHHMMVTHNRLEGTLTCPHCPKRFVNQLRLKTHMISHSEDRPFTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYACIVCKQRFKYLGDKNKHERRHESLGGSGFKRIVTGRNAKKGEGDEDTSEEQEQEQEQEIELEMDQDQFEIEGELGEEFEEGEEFDTEEQIVKFEAQEIEGEYEQEYQQEYEETSREASEAAEVIMSMEDTTVYTEEVTAENIEGAEMITDDIMTSQILQSGTVVHIQQQDDDGKIQVIPVMLSLPDLSEGGSEVNLATASIMYNSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01273289;
90% Identity: iTF_01273289;
80% Identity: -