Basic Information

Insect: Psyttalia concolor
Gene Symbol: PRDM5_1
Assembly: GCA_030522845.1
Location: JAPYZM010004684.1:5255-10027[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00012 0.02 16.4 0.4 3 23 786 806 784 806 0.97

2 17 0.6 1e+02 4.7 0.4 1 19 812 830 812 832 0.81

3 17 0.7 1.2e+02 4.5 0.8 2 23 839 860 838 860 0.95

4 17 4.7e-05 0.0079 17.6 1.2 3 23 869 890 868 890 0.98

5 17 0.019 3.1 9.5 1.8 1 23 897 920 897 920 0.94

6 17 9.5e-05 0.016 16.7 0.7 1 23 926 949 926 949 0.94

7 17 0.071 12 7.6 1.0 2 23 957 977 957 977 0.96

8 17 1.4e-07 2.3e-05 25.6 2.1 2 23 983 1004 982 1004 0.97

9 17 2.3e-06 0.00038 21.8 0.2 1 23 1010 1032 1010 1032 0.99

10 17 0.0044 0.73 11.5 2.8 2 23 1044 1066 1043 1066 0.95

11 17 1.9 3.2e+02 3.2 0.9 1 23 1072 1095 1072 1095 0.81

12 17 0.029 4.8 8.9 2.9 2 23 1117 1139 1116 1139 0.95

13 17 0.00043 0.072 14.6 1.0 2 23 1146 1168 1145 1168 0.96

14 17 4.1e-05 0.0068 17.8 1.7 2 23 1176 1197 1175 1197 0.97

15 17 0.0018 0.3 12.7 2.4 1 23 1203 1226 1203 1226 0.96

16 17 0.33 55 5.5 3.2 2 23 1233 1254 1232 1254 0.96

17 17 0.24 40 6.0 2.0 1 23 1260 1282 1260 1282 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00012	0.02	16.4	0.4	3	23	786	806	784	806	0.97
2	17	0.6	1e+02	4.7	0.4	1	19	812	830	812	832	0.81
3	17	0.7	1.2e+02	4.5	0.8	2	23	839	860	838	860	0.95
4	17	4.7e-05	0.0079	17.6	1.2	3	23	869	890	868	890	0.98
5	17	0.019	3.1	9.5	1.8	1	23	897	920	897	920	0.94
6	17	9.5e-05	0.016	16.7	0.7	1	23	926	949	926	949	0.94
7	17	0.071	12	7.6	1.0	2	23	957	977	957	977	0.96
8	17	1.4e-07	2.3e-05	25.6	2.1	2	23	983	1004	982	1004	0.97
9	17	2.3e-06	0.00038	21.8	0.2	1	23	1010	1032	1010	1032	0.99
10	17	0.0044	0.73	11.5	2.8	2	23	1044	1066	1043	1066	0.95
11	17	1.9	3.2e+02	3.2	0.9	1	23	1072	1095	1072	1095	0.81
12	17	0.029	4.8	8.9	2.9	2	23	1117	1139	1116	1139	0.95
13	17	0.00043	0.072	14.6	1.0	2	23	1146	1168	1145	1168	0.96
14	17	4.1e-05	0.0068	17.8	1.7	2	23	1176	1197	1175	1197	0.97
15	17	0.0018	0.3	12.7	2.4	1	23	1203	1226	1203	1226	0.96
16	17	0.33	55	5.5	3.2	2	23	1233	1254	1232	1254	0.96
17	17	0.24	40	6.0	2.0	1	23	1260	1282	1260	1282	0.95

Sequence Information

Coding Sequence: ATGAGTGACCAAACTGAGACTATGATATTTATTAGTGAcaagaataatgaaaattcgaGGGAGGAGACTGGGAAAAGTGTGATTTATTCCTTCGATGATAATGTAGAACTTGGTGGGGCCGAGCGGAAGAGTAAGGAGGACAATGGAAATGTTTCTGGAGATGCCAAGTCAATTGTCATGCAGACCTATAAAAGATTACCATCAGCAGTCGATCCATCTCCACTGGCTAAAGGTGACCACAATTACAGCGACAGCCAGCCCATCCTCGAGAAGTCCATGTGCCAAATAAAAACCCTGAGTGATTTGAAGAAAGTCACGCCGAAAGTCAAGCTCTTTGCCCCCGAGATCAAAACCCTCAACGAGTTCTCGAAGCACTCGCAGTCCTCAAAAGACACTCGAGCACAGCTGAGGAACTACTGCAGGACCTGCGCAGGCCTAAAAATTCCCCTGGTGGATATCTTCAGTGAGAAGGGGGTTCAGATGCGCCTGAACCAGCAGatgaagcacctggaggagaTCAACGAGCACGACGGTCTCTCCACGCATATGTGCATGGACTGTATCTGCGACTTGAAGATGAGTTACAAGTTCTTCATGCAGATAAAGAAGGCACAGGTCAAGCTGAAGTCGTTAGTAAGCATCCCTATAAATGAGGAAAAGCAGCGAGTTGCGACGATTTCTGAGATTCCAAAAAAGAAGTCTTCAATTGAGCCACTAAAACCCTTAAATGAACCGATCAAACCAATCGGACCAATTGAACCACCAATTGAGATAATTAAACCGCCAAGGGAACCTCCAAGAGAACCTCCAAGGGAATCTCCAAGAGAACCTCCAAGGGAATCTCCAAGAGAACCTCCGAGGGAACCTCCTAGGGAACCTCCAAGGGAACCTCCGAGGGAACCTCCAAGAGAACCTCCGAGGGAATCTCCAAGAGAACCTCCGAGGGAACCTCCAAAGGAACCTCCAAGggaacctccaagtgaacctatTGAAGAACCGACTGATCCACCGGTACCCGTCGCTCAACCAACATCTCCAGCGCCGGCCTCTCCTCCTCCAGCTTCTGACAACGAGTCCATCGAGGAATTTGACCCTGACGACTGTTCAATGGACAATGATCCTTTAGAATTAGTAGAAGATAAGTCAGACGAGCCGGAGGCTCCAAAAAAATCTGCCGCCCCGAGCGAACCTCAAGAGCCAGAACCTCCTAAAAAATCATCTCCCAGAGCCTCGGAGCCAGAAGATCCTCCCCAACCAGTGCTAAAGTCAGAGACAGTTTATCAGTACGATACAGAGTTGAACACTTACATAAAAATAGAGCCCAAGAGGCATCCCCCAGTACCCGCCCCCAAGAACTCAGAAGACGTAGAGAAATCGGTGGTAAAGTTAGGGGAGTCGGATCAGAAGAAGAACCTTCTAAAAAGGAAAGCGCCGACCTTAGGGAGGGATTCCCTGGACTCCCTGAGCGCTTCAGAGTCCGACTCTTTGAAGAAATGCGTGAACGACCCGAAGCTCCAGAAGTTGATGGGAAAACCCTTGAACGTGTCCCCCTCGAATGAAGAGGGGATCATGTACGTGACAGTCAAAGGACCAAAACCAAACGAGCTTCTGCTGGTTAAAGTCAAGAAGATGGAGAAGAATGCGGACAAAAAGGAGGAGGTCAAGCCGTTAATCTTGAAGAAGCCCAATGATCTGGGATCCTTGAAGTCAGTCGAGAAGGCCCTGAAGGCTTTACCACTGCCTTTTAAATCCCCAGAGTCTCCGAAGAAATGTGAGAACACTCGGGATGCGATTATTGAGCAGCAGATAGAGCAGTACAAGAAGAAGCGAGAGCAGATTCTGGGGGGCACTGCAGGTCTCCCCAATGCTTTAAAATTCGATGATGGAGCTGTGAGGTTTGTCAACCCAGTCCAGGGTCTCTCAGAAACAGACGACGGAAAATATGACTCGTGTGATGAGTCCAGGGAGAGGATCAAATTTAGGACATACAGCTCCATTGAGACTGATAAGAATCGTCCTTTATCCACTAAAGAGTATCTAGCAAAATTTGCCAGGCTCAAGCGGAAGTGGGAGGAGGCGAAAGCTAAGAAGGCGGCCCTGCAGGAGGAGCTCAATGCCTCCTACAACGAGGGAAACCTCGAGAAGTTGACCAGAATCTTGGGAGAAAGGGAGAAGAACTTGCACAACTTCCAGGAATACTTGAGACAGAGGAAGATCGTGATAACAAAGCTGAAGGATGAGGATATAATATCCCTTTACGAAGGGAGGAATACAACAGACGTGAGGAATAAGTTTCCAGATCTGATTGACGAGGAGATGCCTGTGGATGGACTGACAGACATCGACTTCTTGGATTGCGACTACTGTAGCCAGACATTTTCCTCCCGTGATGTCCTTGAAGATCATCTGAAGACCCACGACTACAAGATCCACTACTTCTGCGAGGACTGCGGTGAGGAATTCTTTACCATTAAGGCCAAGAGGTCTCACAATGTCACATGCATCAAGAAACTCATCTGCAAGTATTGCGACTTGATGCTTGAGTCTAGGGGGAAGAAGAGGCAGCACGAGCAGAAGCACTGCGACGCAATTTATGGACAGCTCTGTGACATATGCGGTGAGAAGTTCAAGCATCAGGGTACCTTGGACCAGCACATCAAGACCCAGCACATGAGTTGGGAGAAGGTGTTCGAGTGTCCCAAGTGTGAGAAGAAATTCGCATTCAGACAGAAATTGAGTTTTCATTTGAAGTCAGTTCATACGACTATGAGAGCGTATTTGTGTGAGGATTGTGGAGCGGATTTCAAGAATCCAGCGTCATTGAGGCACCACAGGATCCGAAAGCATCAACCAACTGGGAACAAGCGGGAGTGCCCGGTCTGCCACAAGATGGTGCCTTTCTACAGTCTCTCGAAGCATATGTATACGCATAAAGCCTATACCATTCAGTGCCCACACTGCGACAAGATGTTTAAAAATAGTTCGACGTTGAAGCAGCACGTGAGGATTCACGAAGACCAGAGGCAGTACCGCTGCGACACGTGTGGAGTGGGATTCAATAGGAGGGACGGGCTGAGGCTGCACATGAGGGTACACCAGAAGACCGACAGCCGAGCGTTGAAGGAGTGCTCGTGTCAGATTTGCTCCGAGAAATTCCCGAACCACTCGATGCTGGTGATACACAGGAACCGGGTGCACAAGGATGGCAAACAGTACACCTGTCAAATTTGCAACAGGTCGATGCTGTCGACGAGATCGCTCGACTGGCACATGTCGCATATTCATAATCAAACACCACCGGGTAATTCTAAGCAGGAGGGGGACAGCAGTAGTGAGAAGAAACGGGTGACTTGCAATCACTGCTTGAAGACTTTCAAGACCGAGATGATATTGAGGACGCATATCAAGAATACGCATATGGAGAAAAATCCAGTCAAGTGTTTGGACTGCGAGGAGACGTTCACGTCGGAGGTGAGACTCAGGCATCACATGATGGTGACGCACAACAGATTAGAGGGCACGCTGACCTGTCCCCACTGTCCGAAGCGCTTCGTCAATCAACTGAGACTGAAGACCCACATGATATCGCACTCCGAGGACAGACCATTCACCTGTGAAATATGTGGGTTCAATCTTAAGACTAAGATACAGCTGATCAAGCATCATCAGAACAGGCACAGCGATGAACGACCTTTGCAGTGCAGGTACTGTCCCTGGAGGTGTAAACAAGTGTCGGCTCTCGTGTGCCATGAGAGAACTCACACCAATGAGCGACCGTACTCCTGTATTGTCTGTAAACAACGGTTTAAGTATCTTGGAGATAAGAACAAGCACGAGAGGAGGCATGAGAGTTTAGGTGGTTCTGGCTTCAAGAGAATCGTCACCGGACGAAATGCGAAGAAGGGCGAGGGGGATGAAGACACTTCGGAGGAGCAGGAGCAGGAGCAGGAGATTGAATTGGAGATGGATCAGGACCAGTTTGAGATTGAAGGGGAACTTGGTGAGGAGTTCGAGGAAGGGGAGGAGTTTGATACGGAAGAGCAGATCGTCAAGTTCGAGGCTCAGGAGATCGAGGGGGAGTATGAGCAGGAGTACCAGCAGGAGTACGAGGAGACCTCCAGGGAGGCTTCAGAGGCAGCTGAGGTGATTATGAGCATGGAGGATGCCACTGTCTACACGGAAGAGGTCACCGCTGAGAATATTGAGGGGGCTGAGATGATTACTGATGATATCATGACCAGCCAGATACTCCAGAGTGGGACGGTCGTGCATATTCAGCAGCAGGATGATGATGGCAAGATTCAGGTCATTCCTGTCATGCTTTCCTTGCCGGATCTCTCGGAGGGGGGCTCCGAGGTCAATCTTGCAACTGCATCTATCATGTATAATAGTGGATAG
Protein Sequence: MSDQTETMIFISDKNNENSREETGKSVIYSFDDNVELGGAERKSKEDNGNVSGDAKSIVMQTYKRLPSAVDPSPLAKGDHNYSDSQPILEKSMCQIKTLSDLKKVTPKVKLFAPEIKTLNEFSKHSQSSKDTRAQLRNYCRTCAGLKIPLVDIFSEKGVQMRLNQQMKHLEEINEHDGLSTHMCMDCICDLKMSYKFFMQIKKAQVKLKSLVSIPINEEKQRVATISEIPKKKSSIEPLKPLNEPIKPIGPIEPPIEIIKPPREPPREPPRESPREPPRESPREPPREPPREPPREPPREPPREPPRESPREPPREPPKEPPREPPSEPIEEPTDPPVPVAQPTSPAPASPPPASDNESIEEFDPDDCSMDNDPLELVEDKSDEPEAPKKSAAPSEPQEPEPPKKSSPRASEPEDPPQPVLKSETVYQYDTELNTYIKIEPKRHPPVPAPKNSEDVEKSVVKLGESDQKKNLLKRKAPTLGRDSLDSLSASESDSLKKCVNDPKLQKLMGKPLNVSPSNEEGIMYVTVKGPKPNELLLVKVKKMEKNADKKEEVKPLILKKPNDLGSLKSVEKALKALPLPFKSPESPKKCENTRDAIIEQQIEQYKKKREQILGGTAGLPNALKFDDGAVRFVNPVQGLSETDDGKYDSCDESRERIKFRTYSSIETDKNRPLSTKEYLAKFARLKRKWEEAKAKKAALQEELNASYNEGNLEKLTRILGEREKNLHNFQEYLRQRKIVITKLKDEDIISLYEGRNTTDVRNKFPDLIDEEMPVDGLTDIDFLDCDYCSQTFSSRDVLEDHLKTHDYKIHYFCEDCGEEFFTIKAKRSHNVTCIKKLICKYCDLMLESRGKKRQHEQKHCDAIYGQLCDICGEKFKHQGTLDQHIKTQHMSWEKVFECPKCEKKFAFRQKLSFHLKSVHTTMRAYLCEDCGADFKNPASLRHHRIRKHQPTGNKRECPVCHKMVPFYSLSKHMYTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHQKTDSRALKECSCQICSEKFPNHSMLVIHRNRVHKDGKQYTCQICNRSMLSTRSLDWHMSHIHNQTPPGNSKQEGDSSSEKKRVTCNHCLKTFKTEMILRTHIKNTHMEKNPVKCLDCEETFTSEVRLRHHMMVTHNRLEGTLTCPHCPKRFVNQLRLKTHMISHSEDRPFTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCIVCKQRFKYLGDKNKHERRHESLGGSGFKRIVTGRNAKKGEGDEDTSEEQEQEQEIELEMDQDQFEIEGELGEEFEEGEEFDTEEQIVKFEAQEIEGEYEQEYQQEYEETSREASEAAEVIMSMEDATVYTEEVTAENIEGAEMITDDIMTSQILQSGTVVHIQQQDDDGKIQVIPVMLSLPDLSEGGSEVNLATASIMYNSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01273987;
90% Identity: iTF_01273987;
80% Identity: -