Basic Information

Transcription Factor Domain

TF Family: CSL
Domain: BTD domain
PFAM: PF09270
TF Group: Beta-Scaffold Factors
Description: Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.012 2.2e+02 2.9 0.0 62 99 30 67 5 82 0.82

2 3 2.1e-07 0.0039 18.3 0.0 31 95 103 171 98 178 0.82

3 3 1.2 2.1e+04 -3.5 0.0 71 101 203 233 191 236 0.64

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.012	2.2e+02	2.9	62	99	30	67	5	82	0.82
2	3	2.1e-07	0.0039	18.3	31	95	103	171	98	178	0.82
3	3	1.2	2.1e+04	-3.5	71	101	203	233	191	236	0.64

Coding Sequence: ATGCGGACTATTAATTCGTGCATGTGTATGGAGTACAAAGTGCACCTCACAACTGTCGGCGAGGGGTGGGAGGTCGCGTGGCTGCAAGTCAACACTCAGACAATTCTGACAATAGCCATTCACGTAATTACAAAGAACCACAGAATAGCAGTGACACATAGTGATCATCGGGCTTGGTACTTGCACATAAAGGACGTCAAGGAGAGCGATCAAGGGGACTACATGTGTCAGATTAACACGGATCCAATGTTGAGTCAAGTCGGCCATCTCAACGTTGTTGTACCCCCTGACATTCTCGATTATCCAACCAGTACTGATATGGTTGTGAGAGAGGGTAGCAACGTAAGCCTTCGTTGTGCAGCAACTGGATCCCCAGCTCCCAATATCACGTGGAAACGTGAATCCGGTGAAAAGATAGCGCTTGCAACTGATGAGGAAGTTTCGAGTGTAAACGGAACATTTTTAAACATCACCAGAGTAAATCGCCTCCACATGGGGGCCTACCTCTGCATAGCCTCCAACGGCGTTCCCCCGACGGTCAGCAAAAGAATAATTCTCATCGTTCACTTTCCACCGATGATCATGATTCAGAATCAATTGGTGGGCGCTGAGGAGGGTGCGCAGACAACTCTGGAGTGTCACTTCGAGGCGTTTCCCAAGTCAATTAATTACTGGACGAGGGAGAACAATGAAATCATATCGAACGGGACAGTTGGCAATCCGTACAATCCACATGGACAATTAGGCCTTGTTCGGCCGGAAGTCGGTGTACAGGGGCAGATTAATAAATCACTGTTGTCGTCGTTAATACCCCTGACTTCTCCCGCATTTCGCGGCACCGCGGGGGGGAGGTGA
Protein Sequence: MRTINSCMCMEYKVHLTTVGEGWEVAWLQVNTQTILTIAIHVITKNHRIAVTHSDHRAWYLHIKDVKESDQGDYMCQINTDPMLSQVGHLNVVVPPDILDYPTSTDMVVREGSNVSLRCAATGSPAPNITWKRESGEKIALATDEEVSSVNGTFLNITRVNRLHMGAYLCIASNGVPPTVSKRIILIVHFPPMIMIQNQLVGAEEGAQTTLECHFEAFPKSINYWTRENNEIISNGTVGNPYNPHGQLGLVRPEVGVQGQINKSLLSSLIPLTSPAFRGTAGGR

Sequence clustering based on sequence similarity using MMseqs2