Basic Information

Insect: Psyttalia concolor
Gene Symbol: L
Assembly: GCA_030522845.1
Location: JAPYZM010001664.1:26684-32585[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.7e-05 0.0044 18.4 4.3 1 23 97 119 97 119 0.98

2 19 0.35 59 5.4 3.9 1 23 125 147 125 147 0.97

3 19 7.7e-07 0.00013 23.3 4.3 1 23 153 175 153 175 0.99

4 19 5.4e-05 0.009 17.5 0.9 1 23 181 203 181 203 0.98

5 19 0.0062 1 11.0 0.5 2 23 241 263 240 263 0.96

6 19 0.035 5.9 8.6 0.2 2 23 296 318 295 318 0.93

7 19 0.032 5.3 8.7 0.3 2 23 326 348 325 348 0.89

8 19 0.074 12 7.6 0.1 3 23 382 402 381 402 0.97

9 19 0.13 22 6.8 0.4 3 23 415 435 413 435 0.95

10 19 0.0017 0.29 12.7 0.1 1 23 444 467 444 467 0.94

11 19 8.9 1.5e+03 1.0 0.2 1 19 472 490 472 495 0.76

12 19 1.1 1.9e+02 3.9 0.0 7 23 516 533 502 533 0.89

13 19 0.39 65 5.3 6.4 1 23 554 576 554 576 0.97

14 19 0.0031 0.52 11.9 0.0 1 23 581 604 581 604 0.95

15 19 0.095 16 7.2 1.0 1 23 649 673 649 673 0.90

16 19 8.6e-05 0.014 16.8 1.1 1 23 687 709 687 710 0.96

17 19 2.3e-05 0.0039 18.6 0.4 1 23 719 742 719 742 0.94

18 19 0.63 1.1e+02 4.7 0.8 2 23 750 771 749 771 0.96

19 19 0.0011 0.18 13.4 2.2 1 23 905 927 905 927 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.7e-05	0.0044	18.4	4.3	1	23	97	119	97	119	0.98
2	19	0.35	59	5.4	3.9	1	23	125	147	125	147	0.97
3	19	7.7e-07	0.00013	23.3	4.3	1	23	153	175	153	175	0.99
4	19	5.4e-05	0.009	17.5	0.9	1	23	181	203	181	203	0.98
5	19	0.0062	1	11.0	0.5	2	23	241	263	240	263	0.96
6	19	0.035	5.9	8.6	0.2	2	23	296	318	295	318	0.93
7	19	0.032	5.3	8.7	0.3	2	23	326	348	325	348	0.89
8	19	0.074	12	7.6	0.1	3	23	382	402	381	402	0.97
9	19	0.13	22	6.8	0.4	3	23	415	435	413	435	0.95
10	19	0.0017	0.29	12.7	0.1	1	23	444	467	444	467	0.94
11	19	8.9	1.5e+03	1.0	0.2	1	19	472	490	472	495	0.76
12	19	1.1	1.9e+02	3.9	0.0	7	23	516	533	502	533	0.89
13	19	0.39	65	5.3	6.4	1	23	554	576	554	576	0.97
14	19	0.0031	0.52	11.9	0.0	1	23	581	604	581	604	0.95
15	19	0.095	16	7.2	1.0	1	23	649	673	649	673	0.90
16	19	8.6e-05	0.014	16.8	1.1	1	23	687	709	687	710	0.96
17	19	2.3e-05	0.0039	18.6	0.4	1	23	719	742	719	742	0.94
18	19	0.63	1.1e+02	4.7	0.8	2	23	750	771	749	771	0.96
19	19	0.0011	0.18	13.4	2.2	1	23	905	927	905	927	0.98

Sequence Information

Coding Sequence: ATGCTCTTCAAGGGGAATAGCTCGAGGCTGGAGTTCCTGATCGAGAAGATACAAGCCCACAAAGAATCGCCTTCGCCTCTCCCCGAGGAGAAGTGCAGCGTGAAATTAAaagaTGGATTATTGAGTAGCAGTTACTCTTGGCGAAGTGAAGAAGACAGTTTGACCTGTCAACGAGGAGGCGGCACCCCCTCCTCATGCGCCACCTCAACATCCCAAAGTTTTCCCTCAGAAACTGAAATCGATGGTGATTTGCGATTGAACACCGATTCCCACAATTCATCCGGCCCCTACTCATGTCAATTCTGCGATAAAACGTTTCCCAGTCTCAGTTGTCTAAAGAAGCACGAGCAGACCCATGGCGATCAGATGCCATACAGATGCAGCTGGTGCGCAAGATTGTTCAAACACAAACGAAGTAGAGATCGCCACGTAAAACTACACACTGGGGACAGAAGATACCGTTGTACCCACTGTGAAGCAGCATTTTCACGAAGCGACCACctaaaaattcacatgaaaaCCCACGACAACCAGAAGCCGTACCATTGCACGGAGTGTTCCCGTGGGTATAACACGGCGGCAGCGCTAACCTCGCACATGCAGTCCCACAAGAGGCCCCCAAGCACTCCGAACTACCAGCGCTCACTTCCGACGACCTCCCCCCCAGTGGGCTCGCCAGACCTCCAACCCAAGCTGCAGTATCCTTCTCCCCTGCACCTGACCTGCATGTACTGCAGGGACACCTTCTCCACGATGGACCAGCTCCAGCTACACGTCCAGACCGCCCACGAGGCCCTCCTGCCCCTCCCCAgcccctcctcctcccccccagATCCAGCAGATTGTCAAAGATTGAGGCCCAAAACAGCGGACCTGGAGGACCTGACCTGCGCCAGGTGTTCCGCCAAGTTCCCCAAGCTGTCATCTCTCCGCGAACACCTGGTGTCAGCTCACAACGACGGATTCCCAGCTCTAACCTGTCCCCTGTGCTCCAAGCCCTGCTCATCAGCTACGGAATACGCCGAGCACTACGTCCTCGAGCACTGCGAGAACAAGAGCATACTCCCTCGTCCGAAAAATTCAGAAGTGGAAAAGTTCTACGAATCCCCGAAGGCAGAAAGCTATTCATCAGGCACCCTCCTCTGCGGTCAGTGTGGAGCAGCCCTGAAGGACTTTGAATCCTTCAGAGCACACCTAGCTCGACACCTGCATTCCAATCAGCAAGCAGCAACTGGAATCAACTGTCCCAAGTGTGAGCTCAAGTTTCAGGAGCGAGAGGACATGCTACTGCACCTGACGAAGCACTTAATGGGACAGATCCTGAAGAAGTTCAGTTGTGACGCCTGCGACGAGCTCTTCGGGGACTCCGAGTCCCTCCAGAAGCACATGCTGGACGCCCACGCTCATCATTTATACAGATGTGGAATCTGCCGAGACACCTTCGACTCAATAGTCGGAATTCAGGTGCATTTTACGCTGAAGCACTCGCAGGAGGCCAACGTCTACTCCTGCAACGCCTGCAGGGGAAGGGCTGGACTGGAATCTGGTGAGGGCTTTAGAAGCCCTGGAGAACTGCTCGATCACGTGAGGAATGTACACGTACCCGACCTGAACTCCCCGGGCAATTCAGTATCAACTCCCAGAGTTATAGGAGAATTCTTCAGGTGTTGCTTTTGCGGAATCTTCTGCTCCTCGGACAATGAACTCCAGCATCACCTCGTCAGCCACTCCACCTGCCTCTTCCGGTGCCCCATCTGCAGGGAAGGCTTCCCCGTGGAATTCCTCCTTGATAAACACATGGCGAACGCTCACAATTTAACTGAGCGAACCGACGACTCGAAAGAGAAGAATTCCTTGAAGAGGAGAAGATCTCCAGACTTCAATAGCAATCTGAATCAGCATGATAAGCCCTTTGGCAATCCAACAATGCCACCAGTGAGGACTCATCAGTGTGATCTCTGCGACAGATCAGACTTCTCAAATGATTCTGAGCTCAAGGCTCACAAGAAGCTTGCTCACAAGACGATTTTAACCAAACTTCAGAAGCTGTCATCCTCCTTCGTCTGCAGCTACTGCGGCGAGACACTTCGCTCACGGTTGGAGCTGGAGTCTCATACCCGAGTCCATCATGCTCCAGCTGATCCTGGAAAAAGATACAAGTGCAATATCTGCGATGAGGTCTTTTCGTCCGCAAGCTTTCTCGCTGAGCACAAGCTGCAGAAGCACTGCAAGATTCAGATGAGCGACGTCTGTGTTGTCTGCAGGACTTCTCTTACCACCGAGAGGGAATTCCTTGAGCACGTTCATAAGCACAGTTTGGAGGGGCTCGAGGGAAGGGAGGGCATTGTGAGCCACGTGCCTGCTCACTGCGTTGTTTGCCGGCAGACACTTATAAGTGAGTTTGAGTGCCAGCTGCATGCCAAGTTTCATCTGAGGaacgaggaggaggaggagaggaCGCTTGGCGAGGTGGGCAGATGCTGTATTTGTCTGAGGGAGGTGGGGGAGGAGGAGAGGGTCAGTCTGCCGTCGAAGGAGGTGGGAGGAGAACTGGGGCTGAAGGTCTGCAAGAGGTGCTTTCTCAGACACTCGCAGGGGCTGCCGATTCTGACGAGTCCTTATGAGGTCTGCAAGGAGGAGGGCGAGGTGTTGGGGGTCAAGGAGGAGGAGGACAGCTGCAGTTCGAAGGAACAAAATGATTCAAGCCGTCCATATGACTGTCCACGCTGCAGTCTAAGGTTCACCTTTAGAAATGAACTAGAGCATCATGTTTCAACGCATGATGATAGAGATACATCAAAAGACACTTTAGACAGTGTCATTGTTAAAGAGGAGATTGTTGTGAATACTGGAGAAGATCAAAGTGATGAGAGGAGTGAGGACTTGGCGGAGAGGAGTGACACCCCGGCGAACAATAAAGTTGACTAA
Protein Sequence: MLFKGNSSRLEFLIEKIQAHKESPSPLPEEKCSVKLKDGLLSSSYSWRSEEDSLTCQRGGGTPSSCATSTSQSFPSETEIDGDLRLNTDSHNSSGPYSCQFCDKTFPSLSCLKKHEQTHGDQMPYRCSWCARLFKHKRSRDRHVKLHTGDRRYRCTHCEAAFSRSDHLKIHMKTHDNQKPYHCTECSRGYNTAAALTSHMQSHKRPPSTPNYQRSLPTTSPPVGSPDLQPKLQYPSPLHLTCMYCRDTFSTMDQLQLHVQTAHEALLPLPSPSSSPPDPADCQRLRPKTADLEDLTCARCSAKFPKLSSLREHLVSAHNDGFPALTCPLCSKPCSSATEYAEHYVLEHCENKSILPRPKNSEVEKFYESPKAESYSSGTLLCGQCGAALKDFESFRAHLARHLHSNQQAATGINCPKCELKFQEREDMLLHLTKHLMGQILKKFSCDACDELFGDSESLQKHMLDAHAHHLYRCGICRDTFDSIVGIQVHFTLKHSQEANVYSCNACRGRAGLESGEGFRSPGELLDHVRNVHVPDLNSPGNSVSTPRVIGEFFRCCFCGIFCSSDNELQHHLVSHSTCLFRCPICREGFPVEFLLDKHMANAHNLTERTDDSKEKNSLKRRRSPDFNSNLNQHDKPFGNPTMPPVRTHQCDLCDRSDFSNDSELKAHKKLAHKTILTKLQKLSSSFVCSYCGETLRSRLELESHTRVHHAPADPGKRYKCNICDEVFSSASFLAEHKLQKHCKIQMSDVCVVCRTSLTTEREFLEHVHKHSLEGLEGREGIVSHVPAHCVVCRQTLISEFECQLHAKFHLRNEEEEERTLGEVGRCCICLREVGEEERVSLPSKEVGGELGLKVCKRCFLRHSQGLPILTSPYEVCKEEGEVLGVKEEEDSCSSKEQNDSSRPYDCPRCSLRFTFRNELEHHVSTHDDRDTSKDTLDSVIVKEEIVVNTGEDQSDERSEDLAERSDTPANNKVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00438288;
90% Identity: iTF_01273981;
80% Identity: -