Pcon004032.1
Basic Information
- Insect
- Psyttalia concolor
- Gene Symbol
- Prdm15
- Assembly
- GCA_030522845.1
- Location
- JAPYZM010000836.1:21532-25081[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1 1.9e+02 3.9 0.1 2 23 237 258 236 258 0.94 2 14 0.0018 0.3 12.7 1.8 3 23 267 288 266 288 0.92 3 14 2.4e-06 0.0004 21.7 0.5 3 23 438 458 436 458 0.97 4 14 0.012 2 10.1 0.1 1 21 462 482 462 483 0.93 5 14 7.5e-07 0.00013 23.3 2.6 1 23 491 513 491 513 0.98 6 14 0.7 1.2e+02 4.5 1.8 2 19 518 535 518 537 0.81 7 14 4.8e-06 0.00081 20.7 7.9 1 23 542 564 542 564 0.97 8 14 0.0013 0.22 13.1 0.4 2 23 588 609 587 609 0.96 9 14 0.00027 0.044 15.3 3.3 1 23 614 636 614 636 0.98 10 14 0.00018 0.03 15.8 0.1 2 23 642 663 641 663 0.95 11 14 0.0015 0.26 12.9 6.5 1 23 668 691 668 691 0.95 12 14 0.00038 0.063 14.8 1.6 1 23 697 719 697 719 0.98 13 14 9.7e-05 0.016 16.7 3.9 1 23 725 748 725 748 0.98 14 14 0.04 6.8 8.4 6.3 1 23 753 776 753 776 0.95
Sequence Information
- Coding Sequence
- ATGATGCAGAGTGAAAGTGAAGCTGTGACCATCAACGAGGCTGGGAACTTATCAGTATGCAATATTTGTGGACAGCCCCATGACACTCACGACTGTCCCTTTCTGCTGAATCTCCAATATattccaaacACTCCAATGTTATCGAAAGCCCGACAAACCTTGCCCCCAGACCTGGAGATAACAAAAATGGCGGATGGTACAACGAGTATCCTGACAAAACGTGACTTTCCCCGGGGTACAACCTTCGGTCCATTCGAAGCGAAGCGCAACTGGACAATGAATCCAATCACAAACTTTCCCATCCGTATATTTGGCTCCTCACCATCTGAAACCTACCACCTGGACTACTCCGACGAGAACACCAGCAATTGGATGTGCTTCATTGCCCCGGCTTCGTGCGCCAAAGAGCAGAATTTAATATGTTATCAGGTGAAATCCAACATATTCTACACAGCAATGCGCACAATAACATCTGGAGAAGAGCTGCGAGTGTGGTATACACCATTTTACgctctaaaaatgaaaatgcctcTCTACAATATCGATTTCACCTCCCTGGGGTCTTCAATACCAGCTGACGACCTGCAGGGCTCCTCCGTCGATCGTAAAACCAATCAAATTGAATTACTCAATAAAGATATGGCTCAAGAGCTTGCAGAGCACCTTCCGGCCCAACAATTGGGGGCAAAAGATGACAAGCTCACCTGGAACTGTAAAATTTGCTCAATGGCAATAAATTCCGTGCCCTCCTACGCAAAACACCTAATGGAGCACTATAAATCCCTGTTGGGAGCCTTTTGCAACCTCTGCAATCGAAAATTCTACAACAATTCAGTTCTCCAGAAGCACAGAGCAGAGAAGCATCCGGAATCAGTGGCAGAGGTGTTTGGAATTCCAACATCTGACAATCACCGTCAACAAAATGCCCAAATTATTCTGTTAAATATGAGCGACGCAGAGGGACAGACCTCAGAGGCAATGAAGGACATTCTGGACAAGTTCAAGACTGAAAAGTCCATGTGTGAGAGCAGCATGAGAGAATCCTCCTCGGATCTTCATTTACTGGACACAAATTCCATTAATGTCAACGATCTCCTCCAGAACGGCAATCTAATTGACAATTCATCATTGAAATCCATCCTAGAAAATCAGTGCTTGAACATCAATCTAAACTCAATGGCGGATTCAATTTTATCCGACAACGTTTCATCCTCTGATCCAGTGAAATTCAATGTTGAAGAACTAGCCTCCGAGTTGTTAGACATAACAGAGGATAATGACAGTTTATCACaaagaattgataatttagaTTGCGACATTTGTGGTAAGAAATTCGATAAGCCCGAGTATCTCTATCGTCACCTGAGAAAACACACTGGTGAATTTATTTGTCCAGCTTGTTTAGCTGTCTTCGCCaggaaagaaaatttaatgactCACGTTTGTTCGTATTCACGAAAGAATGACGGCTTTGAATGCCCCTATTGTCAAAAACAATTTACAGTGAAGAAGTACTTGAAACGACACATGATAAAACACTCGAGCAAGAATACCTGCAAGTGGTGTCGTAAAACATTCCCAACGCAATTGGAAATAGACACTCACAAGTGTCCAGCTCCCCGGCATGTCTGTACACACTGTGGCAAACGATTTGTCCATCGGGCTCATCTAATTCGTCACATGAAGCTCCACAGTAATCCAAAACCAGTATCTAAGAGCAATAagagtattaaaaaaaagagcgCTGATGAGAAGCCACTCATATGTGAGAAGTGTGGTGATGTCTTCAAGACTTCATACATATTGAAGCAACATTTACGGTCACACGGAGAGCGTACATTCGAGTGTGACATTTGCCAGAAGAGATTTCACAGGACAAGTGTTTTAAAACAGCATCGacaaattcatgaaaatgCCCAGATCCCCTGCACCATTTGTGGCAAGAAACTAAAGTCGAAGAAAGCTCTGGAAGTGCACGTTCTGTTgcatggaaataaaaaatttcagtgTGAAAAGTGTGACAAGAGTTTCTTCCAGAGGTGCAATTATTTGAAGCACTTCAAGCAAATTCATGGAGAGAAAACCATGTACAAGTGTCCACATTGTCCAACTCAATTTACCAGCGAAACTAGCTATGGTAAACATGTGGAGAGCCATTTGAAGCCTGCCGAGTATTCCTGCGGATTGTGCCAGAAGAGTTTTCATGGGCAGTATCAGCTGAAGAGGCATACACAAACGAGTCACAGTGGAATTGTCTATCGGTGTCCATATTGCAAGATGACAGCTAGGCACAGGCACAGTATGAGGAGGCATTTTGAGAGGCAGCACAAGGGACTGAGTGATGAGTGGGATAGGCCAGGTTTTGTTAATGGTTTAGAGATGAAGATTGAGAAAGTTGAGGGGACTGGGGAGGGTAATAATCTCGCTGGTAGGGGTAGCCAGGAAGCTTTAGCGACTGTTGATGGACAAGATGGCGCAACTGAAGAGGGCACCGGTGGaggaggggcggggggagagCAGGAGATTCTGTTGCAAATGGGGGAGGTTCCTCAGTTGAGTATCAGCGATGCTGATACTCAACTCGCTGAGTCTGTCCTCGGAAATGCGTACATCTTTGGAGAGGATGGGGGGGATATCATGTTTTATGTGCTGGACAATGGTCCTGGTATCAGTGAGTATTAG
- Protein Sequence
- MMQSESEAVTINEAGNLSVCNICGQPHDTHDCPFLLNLQYIPNTPMLSKARQTLPPDLEITKMADGTTSILTKRDFPRGTTFGPFEAKRNWTMNPITNFPIRIFGSSPSETYHLDYSDENTSNWMCFIAPASCAKEQNLICYQVKSNIFYTAMRTITSGEELRVWYTPFYALKMKMPLYNIDFTSLGSSIPADDLQGSSVDRKTNQIELLNKDMAQELAEHLPAQQLGAKDDKLTWNCKICSMAINSVPSYAKHLMEHYKSLLGAFCNLCNRKFYNNSVLQKHRAEKHPESVAEVFGIPTSDNHRQQNAQIILLNMSDAEGQTSEAMKDILDKFKTEKSMCESSMRESSSDLHLLDTNSINVNDLLQNGNLIDNSSLKSILENQCLNINLNSMADSILSDNVSSSDPVKFNVEELASELLDITEDNDSLSQRIDNLDCDICGKKFDKPEYLYRHLRKHTGEFICPACLAVFARKENLMTHVCSYSRKNDGFECPYCQKQFTVKKYLKRHMIKHSSKNTCKWCRKTFPTQLEIDTHKCPAPRHVCTHCGKRFVHRAHLIRHMKLHSNPKPVSKSNKSIKKKSADEKPLICEKCGDVFKTSYILKQHLRSHGERTFECDICQKRFHRTSVLKQHRQIHENAQIPCTICGKKLKSKKALEVHVLLHGNKKFQCEKCDKSFFQRCNYLKHFKQIHGEKTMYKCPHCPTQFTSETSYGKHVESHLKPAEYSCGLCQKSFHGQYQLKRHTQTSHSGIVYRCPYCKMTARHRHSMRRHFERQHKGLSDEWDRPGFVNGLEMKIEKVEGTGEGNNLAGRGSQEALATVDGQDGATEEGTGGGGAGGEQEILLQMGEVPQLSISDADTQLAESVLGNAYIFGEDGGDIMFYVLDNGPGISEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01273978; iTF_00351367; iTF_00728818;
- 90% Identity
- iTF_01273978;
- 80% Identity
- -