Fari009221.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- prdm10
- Assembly
- GCA_000806365.1
- Location
- NW:568841-572906[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8 5.5e+02 0.6 0.3 3 9 20 26 19 26 0.89 2 15 2.8 1.9e+02 2.0 0.1 2 23 237 258 236 258 0.89 3 15 0.00097 0.066 12.9 1.7 3 21 267 285 266 288 0.89 4 15 1.6e-06 0.00011 21.7 0.5 3 23 442 462 440 462 0.97 5 15 0.0089 0.6 9.9 0.1 1 21 466 486 466 487 0.93 6 15 1.1e-06 7.6e-05 22.2 3.4 1 23 495 517 495 517 0.98 7 15 0.12 8.5 6.3 2.0 3 20 523 540 522 541 0.92 8 15 3.5e-06 0.00024 20.6 3.7 1 23 546 568 546 568 0.96 9 15 4.2e-05 0.0028 17.2 0.4 2 23 592 613 591 613 0.96 10 15 0.00047 0.032 13.9 2.4 1 23 618 640 618 640 0.98 11 15 0.00095 0.065 13.0 0.1 2 23 646 667 645 667 0.95 12 15 0.001 0.069 12.9 6.5 1 23 672 695 672 695 0.95 13 15 4.8e-05 0.0033 17.0 2.3 1 23 701 723 701 723 0.99 14 15 0.00063 0.043 13.5 6.4 1 23 729 752 729 752 0.97 15 15 0.027 1.8 8.4 6.3 1 23 757 780 757 780 0.95
Sequence Information
- Coding Sequence
- ATGATGCAGAGTGAAAGTGAAGATGTGATGGCCAATAACACTGAGAGCTTATCAGattgcAATATTTGTGGGCGATCTCATGGCACTCATGAATGTCCTTTCTTACTGGATCTCCAGTATGTTCCAGATACTCCAATGCTGTCAAAAGCCCGACAAACATTACCTCCAGGTCTTGAGATAACTAAAATGGCAGATGGCACGATAAGCATCCTTACAAAACGTGAGTTCCTTCGAGGCACAACTTTCGGACCGTTCGAAGCGAAACGTAACTGGACAATGAATCCCGTCACCAACTTTCCCATTCGCATTTTTGGCACCTCTCCAGCCGAGACATATCATCTGGACTATTCCAATGAAGACAACAGCAATTGGATGTGCTTCATTGCCCCAGCATCTTGCGCCAAAGAGCAGAATCTCATTTGTTACCAGGTAAAATCCAATATATTCTACACGGCAATGCGTACGATAATCTCCGGAGAAGAGCTTCGAGTGTGGTATGCACCATTTTATgctttaaaaatgaaaatgcccTTGTACAACGTTGATTTTGCCTCTCTGGGACCATCAATTCCATCGCAAAACCCTCAGGTGTCGTCAATTGATTCTAAAACCAATCAAATTGAGATACTTAATAAAGATATGGCTCAAAAGCTTGCAGAACGTCTTCCTGCTCAACAATTAGGCGCGAAGGATAATAAAGCTGTCTGGAAATGTAAAATTTGCACAGCGATAATGAATTCGGTGCCTTCTTACGCAAAACACTTAATGGAACACTATAAATTACTTTTGGGAGCCTTCTGCAATATCTGCAATCggaaattttacaataattcaGTTCTTCAGAAACATAAAGTTGAGAAACATTCAGAATTCGTTACTGAAGCTATTGGTATCCCAACCTCTGAGAATCATCGCCAACAAAATGCTCAGATGATTCTGCTGAACATGAGTGAGACTGAGGGACAAAATCCAGAAGCCATAAAGGAGATTCTGGAAAAGCTgaagattggaaaaaataccaGTGATAGCAGCAtcagagaaattgataaagatCCCTCTTCAGATCTTCATCTCTTGGACACAAACTCCATTAATGTTAACGAGCTTTTCCAGAATAGTAATTTCATCGacaattcatcattaaaatctATCCTAGAGAATCAATGCTTGAACATTAATCTCAGTTCAATGACAGATTCAATTCTATCCGATAACATTTCACCTTCCgatccagtgaaatttcacGTTGAAGAAATCACATCGGAGTTATTAGAAATGGCGAATGATAGTGAGAATATATCACAACGAATTGACAATTTGGATTGTGATATTTGTGGAAAGAAATTTGATAAGCCAGAGTATCTTTATCGTCACTTGAGGAAACACACGGGAGAATTTATTTGTCCAGCATGTTTAGCTGTTTTTGCAAGAAAAGAGAATTTGATGTCTCACGTTTGTTCATATTCGAAGagaactgaaaattttgaatgtccCTATTGTCAAAAACAATTTacagttaaaaaatatctaaaacgTCATATGACTAAGCATtttaataagaataattgCAAATGGTGTCGAAAGACATTTCCATCGCAATTAGAATTAGACTCTCATAAATGTCCAGCTCCTCGTCACGTTTGTCCACAGTGTGGAAAACGATTTGTACATCGCGCCCATCTCATTCGTCACGCAAAATTGCATAATAATCCTAAACCATTAGTCAAAACTAACAAAACTATTAAGAAGAAAAGCGCAGATCAAAAACCACTGATTTGTGAAAAATGCGGTATTTCTTTCAAAACCTCTTACATCCTGAATCAACACCTGCGGTCTCACGGCGAACGAACCTTCGAGTGCGATATTTGTCAGAGAAGATTTCATAGAATAAGTGTTCTGAAGCAACACCGTCAGATTCATGAGAATGCCCAAATCCCTTGCAATgtctgtggaaaaaaattgaaatcgaagaAGGCATTGGATGTCCACGTTTTGTTACATggcaacaaaaaatttcagtgtgAAAAATGTGACAAGAGTTTCTTCCAGAGGTGCAACTATCTCAAACACTTCAAACAGATCCATGGAGAAAAGACTATGTACAAGTGTCCTCACTGTCCAACTCAATTTACCAGTGAAAATAGTTACAGTAAACATGTGGAGACCCATTTGAAACCTGCTGAGTATTGTTGCGGATTGTGTCAAAAAAGTTTTCATGGCCAGTATCAGCTGAAGAGACATACACAGACTAGTCACAGTGGAATTGTTTATCGGTGTCCATACTGCAAGATGACTGCGAGACACAGGCACAGCATGAGAAGACACTTTGAAAGACAGCATAAGGCTCTCAGTGATGAATGGGATAGACCAGGTTTTGTTAATGGATTAGaagagaaattggaaaaagtgGAGGGTTCTGGAAAGGAAATAAACTTTGCTCCGACAATTGTTGGAGTGGGTGAAGAGGGTAGAAACAAAGAACAGATGTCAGCTGGTGTACAGGAGATCCTGCTGCATGTCTCAGAAGTTGAGGGGACGGATGAGGTTCCTCAGTTGAGTATCAGCGATGCTAATTCTCACTTGGCAGAGTCAGTCCTCGGAAATGGGTACATCTTCGGGGAGGATGGGGGAGATATTATGTTTTATGTGCTGGATAATGGTCCTGTTGTCAGTGAGTATTAA
- Protein Sequence
- MMQSESEDVMANNTESLSDCNICGRSHGTHECPFLLDLQYVPDTPMLSKARQTLPPGLEITKMADGTISILTKREFLRGTTFGPFEAKRNWTMNPVTNFPIRIFGTSPAETYHLDYSNEDNSNWMCFIAPASCAKEQNLICYQVKSNIFYTAMRTIISGEELRVWYAPFYALKMKMPLYNVDFASLGPSIPSQNPQVSSIDSKTNQIEILNKDMAQKLAERLPAQQLGAKDNKAVWKCKICTAIMNSVPSYAKHLMEHYKLLLGAFCNICNRKFYNNSVLQKHKVEKHSEFVTEAIGIPTSENHRQQNAQMILLNMSETEGQNPEAIKEILEKLKIGKNTSDSSIREIDKDPSSDLHLLDTNSINVNELFQNSNFIDNSSLKSILENQCLNINLSSMTDSILSDNISPSDPVKFHVEEITSELLEMANDSENISQRIDNLDCDICGKKFDKPEYLYRHLRKHTGEFICPACLAVFARKENLMSHVCSYSKRTENFECPYCQKQFTVKKYLKRHMTKHFNKNNCKWCRKTFPSQLELDSHKCPAPRHVCPQCGKRFVHRAHLIRHAKLHNNPKPLVKTNKTIKKKSADQKPLICEKCGISFKTSYILNQHLRSHGERTFECDICQRRFHRISVLKQHRQIHENAQIPCNVCGKKLKSKKALDVHVLLHGNKKFQCEKCDKSFFQRCNYLKHFKQIHGEKTMYKCPHCPTQFTSENSYSKHVETHLKPAEYCCGLCQKSFHGQYQLKRHTQTSHSGIVYRCPYCKMTARHRHSMRRHFERQHKALSDEWDRPGFVNGLEEKLEKVEGSGKEINFAPTIVGVGEEGRNKEQMSAGVQEILLHVSEVEGTDEVPQLSISDANSHLAESVLGNGYIFGEDGGDIMFYVLDNGPVVSEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01273280;
- 90% Identity
- -
- 80% Identity
- -