Basic Information

Insect: Psyttalia concolor
Gene Symbol: Snai1
Assembly: GCA_030522845.1
Location: JAPYZM010005361.1:97-6472[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00037 0.062 14.8 0.1 1 23 264 286 264 286 0.95

2 12 1.2e-05 0.002 19.5 1.1 1 23 294 316 294 316 0.99

3 12 9.9e-05 0.017 16.6 0.2 2 23 324 345 323 345 0.96

4 12 2.2e-06 0.00037 21.8 0.9 1 23 351 373 351 373 0.98

5 12 5e-05 0.0083 17.6 2.3 1 23 380 402 380 402 0.98

6 12 3.9e-06 0.00065 21.0 0.6 1 23 408 430 408 430 0.96

7 12 2.8e-06 0.00047 21.5 0.2 1 23 436 458 436 458 0.98

8 12 5.5e-07 9.2e-05 23.7 1.2 1 23 464 487 464 487 0.96

9 12 2.9e-06 0.00048 21.5 0.5 1 23 493 516 493 516 0.96

10 12 4.2e-06 0.0007 20.9 2.7 1 23 522 544 522 544 0.99

11 12 7.1e-05 0.012 17.1 0.4 1 23 550 572 550 572 0.94

12 12 0.00046 0.076 14.5 0.1 1 23 578 602 578 602 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00037	0.062	14.8	0.1	1	23	264	286	264	286	0.95
2	12	1.2e-05	0.002	19.5	1.1	1	23	294	316	294	316	0.99
3	12	9.9e-05	0.017	16.6	0.2	2	23	324	345	323	345	0.96
4	12	2.2e-06	0.00037	21.8	0.9	1	23	351	373	351	373	0.98
5	12	5e-05	0.0083	17.6	2.3	1	23	380	402	380	402	0.98
6	12	3.9e-06	0.00065	21.0	0.6	1	23	408	430	408	430	0.96
7	12	2.8e-06	0.00047	21.5	0.2	1	23	436	458	436	458	0.98
8	12	5.5e-07	9.2e-05	23.7	1.2	1	23	464	487	464	487	0.96
9	12	2.9e-06	0.00048	21.5	0.5	1	23	493	516	493	516	0.96
10	12	4.2e-06	0.0007	20.9	2.7	1	23	522	544	522	544	0.99
11	12	7.1e-05	0.012	17.1	0.4	1	23	550	572	550	572	0.94
12	12	0.00046	0.076	14.5	0.1	1	23	578	602	578	602	0.92

Sequence Information

Coding Sequence: ATGACGAGCGATGCTGAGAAAGATTCCAGCCACTGCCTGATATGCAATGGAACAATTGATATATCATCGCAGAATTGTGTGCAGATATTCAATGATGAGGCTAATGAAAGTGGAAAACCACTTGCTGAAACCATATGTTGTTTGTTGGACACCAATGTTACAGCTGATAATGTACATTCAACTTTGTTGTGTGACAAGTGCTCCAAATTGTGTCGGGAGTTTGACGAGTTGGAGAGGAAGATGATGGAAATCAAGCAGGCACTTTCCAGTCAGTATAAGATGACTGTGAAGGAAATTCCAGAGTTGAGTACTCCTGAGGATGAAAATGAATGTAATGATCATGATTATTTGGATGGAGTTGAACATCATATTGTTGAAGAGGAAGAACACGATGAGAGTGAAATCAAGCATAATGCCAAAGTGGAAGAGACAGACGTTAAGGATAGTCTGGATACTACCATGGAGGAGCATTTGGATGAGCAATATTTACAAGAAGACCTCAATACGGATCATGCGGAACAAACTAAAATGACTGAGGTATATCTCGATGAGTCAATCTCCATCAAGTTTGAAGATGAAACCGATGGACTGAAACCCACGAAGTCTGAAAAGAAGAAGGAGGGAAGGAAATTGAGAGGGAATGCAAGGGACGAAACTCCAGAGCCGCTGGTAACAAAAGTTGACAATGCCTACTCGTGCCTGCTCTGCTCCAAGGATAATGGGGAACCAGTGACTGGAGATGCTAAAGAAATCGTCACCCACATGAAGACAGCTCACGAGGCTCGACTGTACATCTGCGACATTTGTGGTCTTGACTTTAGAAAAAGAACCGAATTGTCAATTCATCTTGATGATCATGTTGCAAAGGAGGAGGGCGACTTCCAGTGTGAAGTGTGCAACAGGATATTCAGTAATCTAAGATTATTCAGAATTCATCGGAGGATACACTATCCTCAAGTGAAATCGTGGCCTTGTGAGACGTGTGGCAAACGTTACAGCTCCCGAAATCTACTTGATGAACATGTCAATACTCATATCGGTGTGAGACCGTACATTTGCGAGACTTGTGGTAAAGATTTTGCGTCAAAGTACACGTTCAAGGCGCACGTCAAGACCCACGAGGTCCGTCCCAGACCTTTCGAGTGTAACCAATGTAATAAAACGTTCCTGAGTCAGCAGAATCTCAATCAACATGAGAAAACTCATCTGGGAGTTAAGGAGTATGTCTGTCATCAGTGTGGGAAAGCTTTTGGTTCGCCACATAATCTTGAGGTCCACAATATCGTGCATACTGGCTACAAACCTTATATTTGTAAAATGTGTGGTAAAGCATTTGCTCGGAAAGCAGAAATTCGAGATCATGAAAGAACGCACACCGGTGAAAAACCGTATCAGTGCGAGTTTTGTGGAGCTACTTTCAGTCAACGATCTAATTTACAATCCCACAAACGAGCAACGCATTACAATGACAAGAGATACAAGTGTGACGACTGTGGGAAGGGATTTAAGAGACGTAGACTCCTGGATTATCACATTAAAGCTGCGCATACTGGGGAACGACCGTATAAATGTGAAACATGTTCTGCTACATTTGTTTATCCCGAGCATTTTAAGAAGCACATGAGAATTCATACTGGAGAAAAACCGTATTTGTGCGAGGTCTGCGGAAAGGCATTCAACAGTCGAGACAATCGAAACGCCCACAGATTCATCCACAGTGACAAGAAGCCCTACGAGTGCCTTGTCTGTGGCATGGGATTCATGAGGAAACCTCTTCTCTACGCTCATATGCAGTCTCAAGGTCACTTGAATGATACTATCGTCGTTAATCAGCCGAGGCTGACGACCGAGGAAGATCAGGTCATTCTCCCAGATGGAGATGTTCAGTTAATGCTGGAGGAAGATGCAGATGAATTAGGCGAGACTGAGCTGTACGTTACTGATCTGAAGGATCACGTGATAATCCACGAAAACCAGAACATCTATCCCGAACAGAGTGTTTTGGATATAACTGAATCGCAGGACATGGGGGAGGGAGGAATACAACAACTGGTTGTTGATAACCAGGTAAAATTGATCTTGAATGATACATTCAATAATGAGTCTAATTGA
Protein Sequence: MTSDAEKDSSHCLICNGTIDISSQNCVQIFNDEANESGKPLAETICCLLDTNVTADNVHSTLLCDKCSKLCREFDELERKMMEIKQALSSQYKMTVKEIPELSTPEDENECNDHDYLDGVEHHIVEEEEHDESEIKHNAKVEETDVKDSLDTTMEEHLDEQYLQEDLNTDHAEQTKMTEVYLDESISIKFEDETDGLKPTKSEKKKEGRKLRGNARDETPEPLVTKVDNAYSCLLCSKDNGEPVTGDAKEIVTHMKTAHEARLYICDICGLDFRKRTELSIHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHRRIHYPQVKSWPCETCGKRYSSRNLLDEHVNTHIGVRPYICETCGKDFASKYTFKAHVKTHEVRPRPFECNQCNKTFLSQQNLNQHEKTHLGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICKMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCSATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQSQGHLNDTIVVNQPRLTTEEDQVILPDGDVQLMLEEDADELGETELYVTDLKDHVIIHENQNIYPEQSVLDITESQDMGEGGIQQLVVDNQVKLILNDTFNNESN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01273961; iTF_00351336; iTF_00438253; iTF_00438919; iTF_00728798;
90% Identity: iTF_01273961;
80% Identity: -