Fari009837.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- Snai1
- Assembly
- GCA_000806365.1
- Location
- NW:87814-91101[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00033 0.022 14.4 0.1 1 23 270 292 270 292 0.95 2 12 8.6e-06 0.00059 19.4 1.1 1 23 300 322 300 322 0.99 3 12 7.2e-05 0.0049 16.5 0.2 2 23 330 351 329 351 0.96 4 12 1.6e-06 0.00011 21.7 0.9 1 23 357 379 357 379 0.98 5 12 0.00013 0.0087 15.7 2.4 1 23 386 408 386 408 0.98 6 12 2.9e-06 0.00019 20.9 0.6 1 23 414 436 414 436 0.96 7 12 2.1e-06 0.00014 21.3 0.2 1 23 442 464 442 464 0.98 8 12 4e-07 2.7e-05 23.6 1.2 1 23 470 493 470 493 0.96 9 12 2.1e-06 0.00014 21.3 0.5 1 23 499 522 499 522 0.96 10 12 3.1e-06 0.00021 20.8 2.7 1 23 528 550 528 550 0.99 11 12 5.2e-05 0.0035 16.9 0.4 1 23 556 578 556 578 0.94 12 12 0.00033 0.023 14.4 0.1 1 23 584 608 584 608 0.92
Sequence Information
- Coding Sequence
- ATGACGAGCGATGCTGAGAGAGATTCCAATGATTCCAATGATTCCAACAACTGTCTGATATGCAATGACAAGATCGCCCTATCACTCAAGAATTGTGTCAAGATTTTCAGCGATGATGGGAATGGCAGTGATAAACCACTTGCTGAGACCATATGCTGTTTACTTGATACCGAGATTACAGCTGATAATGCACATTCAGTTATTTTGTGTgagaaatgtttaaaattgtGTCAAGAGTTTGAGGTGTTGCAGGCCAAGATGATGCAGATCAAGGAAGAGATCATGAGTGATTATCAAAAAACTCTGAAACAAGTCTCGGAATCGAATAGTGCTGGAGATGAATGTAATGATCATGATTATTTGGATGGAGTTGAGCATCACATTGTTGAGGAGGCAGAACCCGAAGAGAAGGAAATTAAGAATGATCCTAAAACGGAAATCACAGAGATTAAGGATGCCCTAGATACCACTATGGAGGAGCATTTGGATGAGCAATATTTACAAGAGGATCTCAATACCGATCATGCGGAGCAGACAAAAATGACGGAAGTATACCTGGATGAATCAATCAGCATCAAATTTGAAGAGGAATCTGACTCATCAAAAACGGCGCAGCTCgaggagaagaggaaaaaggaaaCAAAGCGACTAAGGGGAACTGTCAGGGAAGAACCTCAAGAGCCGATTGTATCCAAAGTTGAAGACACCTATACGTGTCTTCTGTGTCCCAAAGATACGGATGAACCGATGACTGGAGATGCTAAAGAAATAGTGGCTCACATGAAGTCGATTCACGAGGCCCGACTATACATCTGTGACATTTGTGGGCTTGACTTTCGAAAAAGGAACGAATTATCGATTCATCTCGACGATCACGTTGCAAAAGAGGAGGGTGATTTTCAATGTGAAGTTTGCAACAGAATATTCAGTAATTTAAGACTATTCAGGATTCATCGGAGAATACACTATCCTCAAGTGAAATCGTGGCCTTGCGAGACATGCGGCAAACGTTACAGCTCCAGAAATCTTCTCGATGAGCATGTTAATACTCACATTGGTGTAAGGCCGTATATTTGTGAGACCTGTGGCAAGGATTTCGCGTCAAAGTATACGTTCAAGGCGCATGTTAAGACCCACGAAGTTCGACCAAGACCTTTCGAATGTACCCAGTGCAGCAAAACTTTCCTCAGCCAGCAGAATCTCAATCAGCATGAAAAAACTCATCTGGGAGTCAAGGAATATGTCTGTCATCAATGCGGAAAAGCATTTGGCTCGCCGCATAATCTCGAGGTCCACAACATCGTTCATACTGGTTACAAGCCTTACATTTGTAAAATGTGTGGAAAAGCATTTGCACGAAAAGCAGAAATTCGAGATCATGAAAGAACACACACCGGTGAGAAGCCCTATCAATGTGAATTTTGCGGTGCCACATTCAGTCAACGATCTAATTTACAATCACACAAACGAGCGACCCATTACAATGACAAAAGGTATAAGTGCGATGACTGCGGAAAGGGCTTCAAGAGACGTAGACTTCTGGATTATCACATAAAAGCTGCTCACACTGGAGAAAGACCGTACAAGTGTGAAACTTGTTCGGCGACATTTGTTTATCCAGAGCATTTCAAGAAACATATGAGAATTCATACTGGGGAAAAACCTTATCTGTGCGAGGTATGCGGAAAGGCGTTCAACAGTCGAGATAATAGAAATGCCCACAGGTTCATTCACAGCGACAAGAAGCCTTACGAGTGTCTCGTTTGTGGCATGGGATTCATGCGAAAACCTCTTCTTTACGCCCATATGCAATCTCAAGGCCACTTGAATGACACAATTGTTGTCAATCAGCCAAGACTGACGACTGAGGAGGATCAGGTCATCCTTCCTGGTGGAGGTGTTGAATTACTGATGGAAGAAAACGCTGATGAACTTGGAGAGACTGAGTTGTACGTAACTGATCTCAAGGACCATGTAATTATTCATGGAAACGATAATATCTATCAGGAGGAAAGTGTTTTGGACATTACTGATGGAGAGGGCATAGAGGAGGGAGCAGTGCAGCACATGGTTGTCGATAGTCAgatgACCTTTACTGAGGGCGAAGTAATCCAATGTAAAACGAGTGAAGATGGTGAACAAGTGTACAGCTATAACGATCCTGCAGATGGTGAAACGATAGTCGTATCGACGGGGGCTGATTACAAAGACTTGATGGGTGATAGTAAGAATCCAGTGAGATTGGTTCAAATAAGAATACCATCCTCAGTTGGtgtcgatggaaaaaattggttgAGTCTCGTTCAGCAGAACACGTaa
- Protein Sequence
- MTSDAERDSNDSNDSNNCLICNDKIALSLKNCVKIFSDDGNGSDKPLAETICCLLDTEITADNAHSVILCEKCLKLCQEFEVLQAKMMQIKEEIMSDYQKTLKQVSESNSAGDECNDHDYLDGVEHHIVEEAEPEEKEIKNDPKTEITEIKDALDTTMEEHLDEQYLQEDLNTDHAEQTKMTEVYLDESISIKFEEESDSSKTAQLEEKRKKETKRLRGTVREEPQEPIVSKVEDTYTCLLCPKDTDEPMTGDAKEIVAHMKSIHEARLYICDICGLDFRKRNELSIHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHRRIHYPQVKSWPCETCGKRYSSRNLLDEHVNTHIGVRPYICETCGKDFASKYTFKAHVKTHEVRPRPFECTQCSKTFLSQQNLNQHEKTHLGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICKMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCSATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQSQGHLNDTIVVNQPRLTTEEDQVILPGGGVELLMEENADELGETELYVTDLKDHVIIHGNDNIYQEESVLDITDGEGIEEGAVQHMVVDSQMTFTEGEVIQCKTSEDGEQVYSYNDPADGETIVVSTGADYKDLMGDSKNPVRLVQIRIPSSVGVDGKNWLSLVQQNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01273257;
- 90% Identity
- -
- 80% Identity
- -