Pgib023367.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_963971405.1
- Location
- OZ020492.1:19150970-19156633[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.44 2.8e+03 -1.0 0.0 22 44 905 927 891 936 0.77 2 8 0.031 2e+02 2.7 0.0 21 45 960 984 952 987 0.89 3 8 0.0021 14 6.4 0.1 21 48 988 1015 984 1019 0.87 4 8 0.00086 5.5 7.7 0.1 21 48 1016 1043 1011 1047 0.87 5 8 0.00054 3.4 8.3 0.0 21 52 1044 1075 1042 1077 0.88 6 8 0.0053 34 5.2 0.0 22 52 1073 1103 1070 1105 0.89 7 8 0.016 1e+02 3.6 0.1 21 45 1100 1124 1097 1127 0.91 8 8 0.0026 17 6.2 0.0 21 45 1128 1152 1124 1159 0.91
Sequence Information
- Coding Sequence
- ATGACCTACCTCATTCAGTGGAATTTGAATGGCTATAACTCCAGATTAGAAGAAATCCAGCTACTCCAATCACGCTACCAACCCCTAGCCTTCCTTTTACAAGAAACCCACCTGAAATCGAATTCATGTATAAACTACACAGGCTACACAGTATACCACAACACAGTTACCACGCCTGTCAACTCTAAAGCACGCGGAGGAGCAGCGATATTCGTGGCTAACCATTTACCCACCCACCCAGTTCCTTTGACCACTCATCTCGAGGCCGTAGCGGTACGAACCTCATTTCAGCAACCGGTTACACTATGTTCTGTTTACATACCACCCAACCTCAAGTTTACTAGGGATGATATATCCGGCATAATAGCACAGCTGCCGACCCCATACATTATATCAATGGATGCTAATGCTCACTCCCCTCTATTTGACTCTGAACGACGTAGTGCTGACGCCAGAGGTAAAGAAATTGAGAAGCTGGTGCAAACCTCCACAATTCAGCTACTGAATAACGggagtgttacgcattttaataccaGGCACACTTACTCAGCAATTGATCTTACCATGGCCCATTCACGAATAGCTGGTGATTTTGAATGGTCAGTCCATTCGGACCGAGCTGGGAGTGACCATCACCCCTTACTAATAAAGTATTTACCGAATATGCCCGTTTTTGTGCCAACTAGGCAGTGGAAAATAAGGACGGCTAATTGGGAAACCTACCGCTCCAAATTGACAGGTTCATATCCGGTTATTACAACCGATGTTGAGGAAAGCCTTAAACTCATAACTGAGCCTATTATTACGGCAGCACAAACCGCAATAGGCTACACGAAACCGGGTCCATATAGGCGAACCCCAGTAGTATGGTGGAACAGTGTATGTGCAGCAGCGATAAAGTGTCGCCGACAGCTGTATCATAAGTTCAGAACATACCCCACGCAGGAAAATATGCTCGCACTTAAAAAACAGGAAGCACTTGCAAGGCGAACAGTAAAATATGCCAAACAGCAGCACTGGCGGAGTTACGTATCGACCTTGGGCTCCGATACTACTGTAGGGAAGGTATGGCAGAAAATCAGGCAACTGCGTGGAATTAACCACTCTGCCAATTATGGGCCAATACTGCATGAAGGACAGGTATATACTAACCCCAGTGATATAGCTCACCAGTTTGCACTCTTTTTCAGTGAGATATCCAGCAACGATAACGTGACACTGTCTTCATTGCAGGCCAAACATATCTTGGATGCCACCCCTACATCATTCACTGGGGGTCTTACTGAACAGTATAATGTTTATTTCAATTTGTATGAGTTCCAGCACGCTTTATCTCGCTGCAAAAACTCGGCACCGGGTCCCGACTCCAtaccatacatttttattaaacaacTTCCAAGAAATTACCAAACCCtaattgtagcctattttaatgtaatttggtCAACACAAAAATTTCCTGAATCCTGGAGGCAATCTATTTTGGTGGCAATCCCTAAACTTAAAAAAGACCGCAGTCAACTTACATCATACCGGCCCATTTCACTAACCAACAGCCTTTGCAAGCTTATGGAGCGAATGGTAAATTATCGCCTCACACATGTACTTGAAACTCGTAACCTAATAGTAAATTTTCAATGCGGTGGCAGGAAGGGGCGCACGACCACTGAACATTTAGTTAGAATTTCTCAGTACATACAGGACGCCTTCATAATACAAAGTCACGCTGTTGCCATTTTCTTTGACCTGGAAAACGCTTATGATCGGTGCTGGAAAAGTCCAATTTTGCACTCATTACAACAATGGGGACTACAAGGAAACCTTCCTATGTTTATAATGAACTTTCTAAATAATAGAGAACTATCAGTGCGGGTGGGAGGGCTGACATCAGCTCCTCAGCCCATGGAAAATGGTACTCCCCAAGGTTCAGTTTTAAGTTGCACCCTATTTACTATcgcaattaattcaattgctgaTTACCTGCCGATCACTGTTTATCCCTCACTTTATATTGATGATCTATGCGTAATCTACTCATGTCGTAACTTAGTACAACTGGGCAATACACTAGAAAAAGCCATTCATGGAATTGAAAAATGGGCCAATGACTACGGTTTCCGATTCTCAACCGgcaaaactgcagcaatgcACTTCTGTCGGAAGAGAAACTGTCATGGCAATCCGACTCTAAAATTCAACAACCAGTTGGTTACTTTTAAAGATACGCATACCTTTTTAGGCCTCACGTTTGATCGACGCTTAACTTGGTCAGAGCACATTACCCAGCTGAAATCAAAGTGTGAAAAAGACCTGAATGCATTAAAAACTGTAGCGCATCATCAATGGGGCTCAAATCGGCAGGTGCTACTGACCATGTACAGAGCTTTGATTAGATCGAAACTAGATTACGGGTGCATTGTATACTCCGCAGCGCATCCTACCCTCCTGAAAGCCCTAGATGTGGTTCATAACACTGCTCTAAGACTTTGTCTCGGTGCCTTCAAATCAAGTCCAACAGCAAGCCTGTACGTTGAAGCTAATGAACCACCCCTATTCTTGAGAAGGGACAACTTCATACTTAAATATTTCGCCAGAATATGCAAAAATAGAAACCTGTCCATACTCCTGGATGCCCATAATACTTCACTTCATAATAGATACAATACGCGACCACGCTCATCTAAACCCTACTTTTTCAGACTAAAAgtTGGAGAGACGTCTTTCACATGTACAATCTGCTCGACGTCCTTCAATGAGCGAACTATTTATAGGAACCATATGAGCAACCACAATTGGAAAAAGGGCATTGCATGTACGGTCTGTGAGAAGCCCATAAAAAATGATTACAGTCTAAAGTTGCACATGAGAATTCATATGGGGGAAAAGCCTTTCGCCTGTACAATATGCCCGACATCTTTCAGTAAAGAAGGCCATCTAAACAGACACATGAGAATTCATACGGGGGAAAAGCCTTTCGCCTGTACAATATGCCCGACATCTTTCAGTCAAGAAGGCCATCTAAACAGACACATGAGAATTCATACGGGGGAAAAGCCTTTCGCCTGCACAATATGCCCGACATCTTTCAGTCAAGAAGGCCATCTAAAGAGGCACATGAGAATTCATACGGGGGAAAAGCCTTTCGCCTGTACAATATGCCCGACATCTTTCAGTCAAGAAGGCAGTCTAAAGAGGCACATGAGAATTCATGCGGGGGAAAAGCCTTTCGTCTGTACAATGTGCCCGACATCTTTTAGTCAAGAAGGCTGTCTAAAGAGGCACATGAGAATTCATACTGGGGAGAAGCCTTTCGTCTGTACAATGTGCCCGAGGTCTTTTAATCAAGGAAGCAGTCTAAAACGTCACATAAGATTTCATGCGGGGGAGAAGCctttcgtctgcaaaatctgcCCTAGCTTTTTTAGTCAACATAATAATTTAAAGATCCACATGAAAACACATACGGGGGAAAAGTCTTTCGCCTGTTCGATATGCTCGAAGTCTTTCGATTGCCAAGACATGCGAAATATTCACATGACAACTCATCAATGA
- Protein Sequence
- MTYLIQWNLNGYNSRLEEIQLLQSRYQPLAFLLQETHLKSNSCINYTGYTVYHNTVTTPVNSKARGGAAIFVANHLPTHPVPLTTHLEAVAVRTSFQQPVTLCSVYIPPNLKFTRDDISGIIAQLPTPYIISMDANAHSPLFDSERRSADARGKEIEKLVQTSTIQLLNNGSVTHFNTRHTYSAIDLTMAHSRIAGDFEWSVHSDRAGSDHHPLLIKYLPNMPVFVPTRQWKIRTANWETYRSKLTGSYPVITTDVEESLKLITEPIITAAQTAIGYTKPGPYRRTPVVWWNSVCAAAIKCRRQLYHKFRTYPTQENMLALKKQEALARRTVKYAKQQHWRSYVSTLGSDTTVGKVWQKIRQLRGINHSANYGPILHEGQVYTNPSDIAHQFALFFSEISSNDNVTLSSLQAKHILDATPTSFTGGLTEQYNVYFNLYEFQHALSRCKNSAPGPDSIPYIFIKQLPRNYQTLIVAYFNVIWSTQKFPESWRQSILVAIPKLKKDRSQLTSYRPISLTNSLCKLMERMVNYRLTHVLETRNLIVNFQCGGRKGRTTTEHLVRISQYIQDAFIIQSHAVAIFFDLENAYDRCWKSPILHSLQQWGLQGNLPMFIMNFLNNRELSVRVGGLTSAPQPMENGTPQGSVLSCTLFTIAINSIADYLPITVYPSLYIDDLCVIYSCRNLVQLGNTLEKAIHGIEKWANDYGFRFSTGKTAAMHFCRKRNCHGNPTLKFNNQLVTFKDTHTFLGLTFDRRLTWSEHITQLKSKCEKDLNALKTVAHHQWGSNRQVLLTMYRALIRSKLDYGCIVYSAAHPTLLKALDVVHNTALRLCLGAFKSSPTASLYVEANEPPLFLRRDNFILKYFARICKNRNLSILLDAHNTSLHNRYNTRPRSSKPYFFRLKVGETSFTCTICSTSFNERTIYRNHMSNHNWKKGIACTVCEKPIKNDYSLKLHMRIHMGEKPFACTICPTSFSKEGHLNRHMRIHTGEKPFACTICPTSFSQEGHLNRHMRIHTGEKPFACTICPTSFSQEGHLKRHMRIHTGEKPFACTICPTSFSQEGSLKRHMRIHAGEKPFVCTMCPTSFSQEGCLKRHMRIHTGEKPFVCTMCPRSFNQGSSLKRHIRFHAGEKPFVCKICPSFFSQHNNLKIHMKTHTGEKSFACSICSKSFDCQDMRNIHMTTHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01272434;
- 90% Identity
- iTF_01272434;
- 80% Identity
- iTF_01272434;