Pgib016156.1
Basic Information
- Insect
- Psococerastis gibbosa
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963971405.1
- Location
- OZ020489.1:15492085-15503103[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.23 2.9e+03 -2.3 2.1 151 192 56 98 38 182 0.64 2 4 0.18 2.4e+03 -2.0 0.8 150 181 325 357 308 385 0.45 3 4 5.7e-94 7.2e-90 301.8 25.4 1 300 651 928 651 928 0.90 4 4 0.14 1.8e+03 -1.6 3.9 133 166 960 993 929 1002 0.52
Sequence Information
- Coding Sequence
- ATGTATTTATTAAAGAAAATCGTCGGACTTGGCAACGCAAAACCCACCAaagaagatgatgaagcagCTGTAGAAGGCCGGTCGCGGTCAGAGAGCCCCATTGATGATTCCTTAAACAATAACTTAGAAGATAACTGCTTGGTAGATGAGAAAACAGATGGTAAAAGAAAAAGGCACCGAagcaagaaaaagaagaaaacaaagaAACTAGAGGATTGCAGAAATGAGGAACCCGAAGTTATTTCATCGCACGAAGAGTTGACTTTAAATAGCAAAGAAAATGATGAGGATTCTGAAACTTCGAAGCCTTCCGTTTCCGAACCTTGCTTTGACGATCTTTCTGCACTAGAGAAATCCCACGGAACAAGTAGTACCAGTCAGGATATTTCCTTTTTGGATGCATCTGACTGTCGAAGTGAGAAGAATTCTGACAATTCTGACCTCCGTAccaataataatgaaaactaTGTAAAGCTGGAGGAAAATAAAATTCGAAATGATGAGGACGGAGAGAATTCCAAAAATGATGTTGATTTCGACGAATTTTGGGCAGAATTTGATGCTGAAGAAGGAAAATTGCGTAAAGAGAGTCAGCCTATCGTTGAACCATTAGAAGAAACAGTGAGAAATAATGAAGATGAGGGGAGTATTGAAAAAAGATTAATTGATAATAGCCCTGCATTTCAAGAAGACGGAAGCGTAGATAACATTTTGGTGGAAAATAGTAATAGTATTGAATTAGAGAATGAAATACAAGACTTCTGGGCTGATGTTGATGACAATTTGCATCTCAATGCCCCTAAAGAGAATGACCATACAAATGAGAAAACTATGACCCTCACAATAGACGATGGTATAGATGATATCTGGGCAGATAGAGAAGATGACGCTCCCCTTAGTCGTCCACGAGGCAAGTACCGTGCTAGTAATGAGTCCAGTGAGGAATTATCTGAAGCATCGAAGATGTATGACCCTGAAGATGAGAACCTTCAGAATGAGATAAGCGAAAATAGTAAATATAAGGAtcagattaataaattaagtgatAATTCCATAACCGAAGAGGGCAATACTAGTGCCACTACTAGTGACGAACAAGTCTCTCATGTTGAACCATCCTTGGGAAAGTCTGACAATGTTGACCAAACAACGGTTGATGATTTTTGGGGTGATATAGAAGATGACCCTCAACCACCAGTTTTTCAAATTAGGAAAAGTATAGACGAAACTACTGCTATTGACATAACTGAAAATCCAATGCCTGAAGCTGCGGATGAAAATGTTACGGATATCCCTAATGGTGAAGAACAAAGTGATGAGTCAGAAATGACTAGTAGTGGGGAAACCATACCTTCTGATCCCAAAATGGGTCAAAACTCAGAGGAAATAATGGCATCAGATGTGGTGGGAGGAATTGAAGCTGTGGAGGGGACAGATACGACTCTTAGTGGTGAGTCTCTTTCTTGTGGAGATATTGCCGAATTGCCACCTAAATCCAATGCCAATTCCTCTCTGGGCCTATTCGAGTCTGAAACTGCAACCGAAACCCCTATTGACTCAGAACACAGTGACGATGAGAGTGGTAATGATGAAGATAAGAATTCGTCTGAAGCTGAAGAATTGGAAAAGAAAAATAGTAGTAAAAATTCCAACGGCGTTTCACAAATTCCAATTCCACCTCCATGGGTTGAGCCGTTATGGGCTGAGGAATTAGGAGAGTCAAAGACTTCAATAACCGATCGGGATGTGAAAGAAAAGCATCGCCGCAATTTCGAGAGTGCCTTACGAAGCATAGAAGCACCTCCCAGAAGGAGATCAGTTCTTCTTCCGGATGGTAGAGAGAGGATTCTCCGTGATGAATTGCAAAACAGAGTGTCAGAAAGCAGCGCCGATGGTGAGGCTAGTGAGGATGACGGCATCATGGACTTCTTGGGAAAAGAAAATGATCGTGCTGAAGCACGTCTGGCGGCTCGGCGGCAGGCCCGCGTCGAAGCTCGGGAGATTCGTATGCGTGAGGTGGAGAGGCTGCAAAAGGAGCAGCAGGAGGAAGGCGGAGATAGAGTGTTTGACCTCCATGCCACACCGAGGTCGTCTACGGTCTCCCCCAGGGAGAGACCTACCTCCAACAATAGCTACCATTCTAGCAGACGAAGTTCTGAAGATTCTATGGAGGACGGGGGACTCAGTCTCCGTGATATAAGGCATGAGCTTAAGGAAGTCGAAGAAAAGTTTCGGAAGTCAATGATTGCTAATGCGCAGTTGGACAACGAAAAAGCTGCGCTCTCCTATCAAGTTGAGCTTTTAAAGGACAAGTTGGAAGATTTAGAAGAAGCGCACTCCCAGCTGGGCCGCGAGCACCGTGAACGATGTAGGGAACATGAAGCGCTTAAACGAGCGACGATAAAATTGAAAGAAGACTTAAATATGTGTAGACAATGcttggaagagagggagatgCTAATCGCCGATTACGGACTGGTCATCGTCGGTGGGGAAGTCGACGACAAGGGAGAACTCACGCCGAGAACCCTCGTCTCGAAGCAGTCTGCCGAAATACTCGATTCTGCCGGCGAAGGCTCACTGGATGTAAGATTGAAATCATTAGCAAAGGAGAAGAATGAGCTTTTGGATGAAGTAAGACACTTGAAATTGGAACTGGAAGAAGAAAGGAATAGGAGAAGAAATGACAAAATGCTAAGTAACGGGCCCATAGGAGATGAGATTCAGCAAACGCTTAATGATTATAGGTTTCGACTTCAGAAAGCAGACCAGGAGACCAGCACATTACAAGCCACTGTTGCGCGACTTGAAAGTCAAGTGATTAGATACAAATCGGCCGCTGAAACATCAGAAAAGGCTGAAgatgaattaaaaattgaaaaaaggaaaTTACAACGTGAGCATCGAGAGTCTATAGCTAGGATTGAGGAACTGGAGACATCCAATTCTCACCTACAACGACGCATGGATAAGTTGAAGAATGCCAAGTCTACCCTGCTCAAGGAGCTCTGA
- Protein Sequence
- MYLLKKIVGLGNAKPTKEDDEAAVEGRSRSESPIDDSLNNNLEDNCLVDEKTDGKRKRHRSKKKKKTKKLEDCRNEEPEVISSHEELTLNSKENDEDSETSKPSVSEPCFDDLSALEKSHGTSSTSQDISFLDASDCRSEKNSDNSDLRTNNNENYVKLEENKIRNDEDGENSKNDVDFDEFWAEFDAEEGKLRKESQPIVEPLEETVRNNEDEGSIEKRLIDNSPAFQEDGSVDNILVENSNSIELENEIQDFWADVDDNLHLNAPKENDHTNEKTMTLTIDDGIDDIWADREDDAPLSRPRGKYRASNESSEELSEASKMYDPEDENLQNEISENSKYKDQINKLSDNSITEEGNTSATTSDEQVSHVEPSLGKSDNVDQTTVDDFWGDIEDDPQPPVFQIRKSIDETTAIDITENPMPEAADENVTDIPNGEEQSDESEMTSSGETIPSDPKMGQNSEEIMASDVVGGIEAVEGTDTTLSGESLSCGDIAELPPKSNANSSLGLFESETATETPIDSEHSDDESGNDEDKNSSEAEELEKKNSSKNSNGVSQIPIPPPWVEPLWAEELGESKTSITDRDVKEKHRRNFESALRSIEAPPRRRSVLLPDGRERILRDELQNRVSESSADGEASEDDGIMDFLGKENDRAEARLAARRQARVEAREIRMREVERLQKEQQEEGGDRVFDLHATPRSSTVSPRERPTSNNSYHSSRRSSEDSMEDGGLSLRDIRHELKEVEEKFRKSMIANAQLDNEKAALSYQVELLKDKLEDLEEAHSQLGREHRERCREHEALKRATIKLKEDLNMCRQCLEEREMLIADYGLVIVGGEVDDKGELTPRTLVSKQSAEILDSAGEGSLDVRLKSLAKEKNELLDEVRHLKLELEEERNRRRNDKMLSNGPIGDEIQQTLNDYRFRLQKADQETSTLQATVARLESQVIRYKSAAETSEKAEDELKIEKRKLQREHRESIARIEELETSNSHLQRRMDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -