Ppal009095.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- -
- Assembly
- GCA_014825455.1
- Location
- QVNV01005138.1:74547-78439[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.018 1.7 9.5 0.4 1 20 195 214 195 218 0.94 2 10 0.0043 0.42 11.4 1.9 1 23 432 454 432 454 0.99 3 10 0.032 3.1 8.7 0.8 6 20 545 559 543 561 0.93 4 10 0.037 3.6 8.5 1.6 2 21 821 840 820 841 0.93 5 10 1.2 1.1e+02 3.8 0.3 2 23 856 878 855 878 0.93 6 10 0.65 63 4.6 2.3 1 23 883 906 883 906 0.92 7 10 0.00017 0.016 15.9 4.5 1 23 935 958 935 958 0.97 8 10 2.1 2e+02 3.0 0.5 2 23 967 987 966 987 0.94 9 10 0.017 1.6 9.6 5.2 2 23 991 1012 991 1013 0.95 10 10 6.9e-05 0.0067 17.1 0.6 2 21 1020 1039 1019 1040 0.93
Sequence Information
- Coding Sequence
- ATGAACGATAACACCATGACTGCTTATGAGGATAAGAATGATAGTGATAACACAACATCACTGTTATCTGATCTAACCAGTATAGAAGTCGAGTGCAAATTAGAACCGTCCGACCACGAATTAACCGAAGATTCACCAACATACGATGAAGTCTTATTTCACATTCCAGTGTTTGCACCTAAAATTAAAAATCCAGTAATTTTATTAGAGAAATGTGATAATATTTGGAAAACATTACAATTAATAAAAACTGTACAACCTGAGCAAATAACATCAAATGAAGATTACACCACCAGTACAGAAAAAGAGAAAAACGAAAACCATAATAAAGAAAACGAAATAAAAGAAGAAGAGGAGGAGGTAGAGGAGGTAGAAGAAATGGAAAGAGAGGAAGAAGAGGAAGGAGAGGAAGGAGAGGAAGGAGAAAAAGGAGAAGAGGAGGAAGAGGAGGAGAAAAAAGAACATTTAAATGAAACTTTACAGTCTGTCTATTGTACTAACAAACGATTTACAAAGAGAGAGAGAAATAAAAATACTGCACTACTTCCTTTCAAATTTTCTGTTCAAAGTACACGAAAAGTATATCCTTGTCTTACATGTGGCAAACAATATATGGAGAGACGATCGCTAAGAAAACATGTATGGAAAATACATGGAATTTTTCTTCCGTTAATACGTGAGCGTGTCAGAACTTCTACAAATTCAACTTCGGCAAATTCAACCTCTTTAAAATCACCTGACAAAAAGGATCTTGTCAGTTCAGATGTTTTGCTTAAAAAAAGAAACATTTCTGAAAGTCATCACATTGACGAAAATCCACATGGAACGACTACTGCTGCAAAAGCAAAAGTCAAACATCCATCTATAATGGATACGTACGTTAAATGTACATTGTGTAAACGGAGAGTAAGTTGTTTAAGAAAGCACTTGATGAGTTATCATAAAATTGGAGCTAATTCAAGTTTGATGAAGCAGTTAGAATCTTCAGTAGTGGAGAATAAAGTAACACCAAATAAGAAAACATCCTTAAGCAGTATATTGTCTGGCAGATCTCCTCAAACATCTTCTACGCAAAACATACGAGATAGCTTTCGCATAATGGACAATGAAGATACTGAAGAAATACTCCCAGTTACCACAAAACGAAGACGTACGTTATCCCGGGAAAATAAAAAACTCAAGATCGATGAAAATAAAAAACTCAAGATTGATGAAAATAAAAAACTCAAGATCAATGAAAGTCCTGCACGTAATGAAAATAAGCGTAGAACACAGTCTATAAATGTTACTTCATATAAATGTTCGATTTGCCTTGGAACATACGCTTCTCAACATGGTTTATACAAACATAAACGTATTCACAAAATCCGCGGGGAGACTAAAGAAAATTTCCATAGGTTTAAATGTAGATATCTTAATTCACCGCTAAACAAGAGATATCGCTTGCTCCAGTCTTCCGCAAAATCAACTGTCATTACAGAAAATAATCGCGGTTACATAAAAAGAGGTGTACAGCCTAATAATTCCAAAGAGAGTCAATTATTTCGGGAAGAAACATTCAATCCAAAGCGCAATGTGGTTAATATTAAGTCAGGTAGAAATATGACGAAAGACAGCAGAACTATTTGTTCGTGTGGAAGATCTTTTCGTAATCCTCATACTTTGTTCATCCATAAAGAACAATGTAATTTTGATGCTCAAGAAAATAAAAGAACACAGACTGTTAGAAAACGTAGTTATGATGACAAAGATCTTGGAAATGGTATTAATATAAAAATCAAAAAGCGAAATGACTCTTATGAAATAGTTAATAAAGATATTGATGACAAATCCGATAAGTCTATCCAAATAGAAAACTCTTTTTCGGTTGCATCGTCCAAGTCATCTGATCATGTCATCAAAGACAATATATCCACTAAAGTGGAAAAAAAATCAGAAGTGGATACAATTAAACCACCTGAATACAGTAAAGACCATAGCATTATGAAATTAGAAATTGTAGACGAAGATTTGGTCGTAGATATTGAAGATGATGCAGTTAATACTGATAAAACCGATACAATAAAGCAGGTAACTGCACCAGAACGCGATGAAGGATATTTATTACAACAAGATCGGAAAAGTGACGAAAAAAATACGAACACTACAGAGTCTGACAAGATGTTAGAGGAAATGCATGACGTTTGTGAAGTTCTTGCAGAACGCCAAGTAAAGAATACGCCAGAAGATAAAACAGTATTGAAAGATAATGTTCAAGAAAATAGTCAGACTAAAGAACAGAAAAGTAGTTCGGTTAAAAGCCAAGAAATATATATACACCAAGAGAATAAGATGGAGTTAAGATCTTGCAAACGATCACGAAGTGCCAACTTTGAGAATTTTGATGATACATTTACCAGAAGATATGATAGAGAATTTGACAGACCGCAACTTTATATGACAAAAATGGGTTCTTCTTTGAAGTGTGGATATTGTAATGAACAATTTAGCACTACTAATTCATATGATAACCATCAGTGTGTCGTTAAAGAAGGGAAACCTTTTGATAGTTTTTCCTTATATTTACCATGCTTCTATTGTAGCGAAGTGTTGAACACTTATCAAAAATATGACGAACATATGACAATTAAACATTTAGATGACATGTTTAATTGTTATCAATGCCCTGAACGATTCAGACATGACAAAGCACGATTAATTCATTTACAAAATTATCATGACGATATGTCTTGTAGAATTTGCAACAAGAAGATGAGCACCTCGACCAAAATCCTACATGAAGGTTATCATTTTGGCTTTGGATATCCTTGCCACAAATGTAAGAAAGCTTATACCAGTAAAAAGAATCTTTCCTATCACAAATCTACAATACATCCAGCCGGAGGTGATAGTCTAATAACTTGTAGCATATGTTTGAAATCTATAAAACTAAAAACCTTTCGAGGACATATGGCTACGCATAAAGATAACGAGTGTCATTTCTGTCGCAAAATATTTTCTAATAGGACAGGAATGGAATATCATACAATGACACATCACGGTACACATTCTAAACTAAAGTGTAACATTTGTGGCACACGTTTTATGAATAAAAACCAGCTTAATAAACACGAAAAAATGGGAGCTTGTAGAAACAATGACAAAAAAATAAAATCGAGGGATGTATATTATACTAATGCCAGAAATTATTAA
- Protein Sequence
- MNDNTMTAYEDKNDSDNTTSLLSDLTSIEVECKLEPSDHELTEDSPTYDEVLFHIPVFAPKIKNPVILLEKCDNIWKTLQLIKTVQPEQITSNEDYTTSTEKEKNENHNKENEIKEEEEEVEEVEEMEREEEEEGEEGEEGEKGEEEEEEEKKEHLNETLQSVYCTNKRFTKRERNKNTALLPFKFSVQSTRKVYPCLTCGKQYMERRSLRKHVWKIHGIFLPLIRERVRTSTNSTSANSTSLKSPDKKDLVSSDVLLKKRNISESHHIDENPHGTTTAAKAKVKHPSIMDTYVKCTLCKRRVSCLRKHLMSYHKIGANSSLMKQLESSVVENKVTPNKKTSLSSILSGRSPQTSSTQNIRDSFRIMDNEDTEEILPVTTKRRRTLSRENKKLKIDENKKLKIDENKKLKINESPARNENKRRTQSINVTSYKCSICLGTYASQHGLYKHKRIHKIRGETKENFHRFKCRYLNSPLNKRYRLLQSSAKSTVITENNRGYIKRGVQPNNSKESQLFREETFNPKRNVVNIKSGRNMTKDSRTICSCGRSFRNPHTLFIHKEQCNFDAQENKRTQTVRKRSYDDKDLGNGINIKIKKRNDSYEIVNKDIDDKSDKSIQIENSFSVASSKSSDHVIKDNISTKVEKKSEVDTIKPPEYSKDHSIMKLEIVDEDLVVDIEDDAVNTDKTDTIKQVTAPERDEGYLLQQDRKSDEKNTNTTESDKMLEEMHDVCEVLAERQVKNTPEDKTVLKDNVQENSQTKEQKSSSVKSQEIYIHQENKMELRSCKRSRSANFENFDDTFTRRYDREFDRPQLYMTKMGSSLKCGYCNEQFSTTNSYDNHQCVVKEGKPFDSFSLYLPCFYCSEVLNTYQKYDEHMTIKHLDDMFNCYQCPERFRHDKARLIHLQNYHDDMSCRICNKKMSTSTKILHEGYHFGFGYPCHKCKKAYTSKKNLSYHKSTIHPAGGDSLITCSICLKSIKLKTFRGHMATHKDNECHFCRKIFSNRTGMEYHTMTHHGTHSKLKCNICGTRFMNKNQLNKHEKMGACRNNDKKIKSRDVYYTNARNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268617;
- 90% Identity
- -
- 80% Identity
- -