Pden006150.1
Basic Information
- Insect
- Pseudomyrmex dendroicus
- Gene Symbol
- -
- Assembly
- GCA_014825645.1
- Location
- QVNZ01007191.1:37556-45683[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.018 2.1 9.5 0.4 1 20 233 252 233 256 0.94 2 9 0.0066 0.77 10.9 1.9 1 23 461 483 461 483 0.99 3 9 0.032 3.8 8.7 0.8 6 20 572 586 570 588 0.93 4 9 0.053 6.2 8.0 1.5 2 21 843 862 842 863 0.93 5 9 0.043 5.1 8.3 0.3 2 23 878 900 877 900 0.96 6 9 0.43 51 5.1 2.8 1 23 905 928 905 928 0.94 7 9 0.00017 0.02 15.9 4.5 1 23 957 980 957 980 0.97 8 9 2 2.3e+02 3.1 0.8 2 23 989 1009 988 1009 0.94 9 9 0.0012 0.14 13.2 1.3 2 23 1013 1035 1013 1035 0.95
Sequence Information
- Coding Sequence
- ATGAGTACAAAGGCAGGGAACGCAGACGCTTGCAGTCTGCTCGGGATCTTGTATGGTGAAGTCTCGCGTTACGTCTTGCTGCATGTGACCGTGCGAAATCAACTGTGGTTTTTTAAACTCTCAGAGATCGCATTCTCCTTTAGAATGAACGATAACACCACGACTGCTTATGAGGATAAGAATGATAGTGATAACACAACATCACTGTTATCTGATCTAACCAATATAGAAGTCGAGTGCAAATTAGAACCATCCGACCACGAATTAACCGAAGATTCACCAACATACGATGAAGTCTTATTTCACATTCCAGTGTTTGCACCTAAAATTAAAAACCCAATAATTTTATTAGAGAAATGTGATAATATTTGGAAAACATTACAATTAATAAAAACTGTACAACCTGAGCAAATAACATCAAATGAAGATTACAGTAAAGAAGAAGAGAAAAAAGAAAACCATAATAAAGAAAAAGAAATAAAAGAAGAAGAGGAAGAGGAGGAGATAGAAGAGGTAGAGGAGGTGGAAAGGATGGAAGGAGAGGAAGGAGAGGAGGAGGAAGAGGAGAAAAAAGAACATTTAAATGAAACTTTACAGTCTGTTTATTATGCCAACAGACGATTTACAAAGAGAGAGAGAAAGAAAAATACTGCACTACTTCCTTTCAAATTTTCTGTTCAAAGTACAAGAAAAGTATATCCTTGTCTTACATGTGGCAAACAATATATGGAGAGACGATCGCTAAGAAAACATGTATGGAAAATACATGGAATTTTTCTTCCGTTAATACGTAAGCGTGTCAAAACTTCTGCAAATTCAACTTCGGCAAGTACAATCTCTTCAAAATCACCTGACAAAAAGGATCTCGTGAGTTCAGATGTTTTGCTTAAAAAAGGAAATAATTCTGAAAGTCATCACATTGACGAAAATCCACATGAAACGATTACTGCTGCAAAAGCAAAAGTCACTAAACCATCTATAATGGATACGTACGTTAAATGTACATTGTGTAAACGGAGAGTAAGTTGTTTAAAAAAGCACTTGATGAGTTATCATAAAATTGGAGCTAATTCAAGTTTGATGAAGCAGTTAGAATCGACAGTAGTGGAGAATAAAGTAACACCAAATAAGAAAACATCATTAAGCAATATATTGTCTGGTAAATCTCCTCAAACATCTACGCAAAATATACAAGATAGCTTTCGTATAATGGACAATGAAGATACTGAAGAAATATTCCCAGGTACCAAAAAACGAAGACGTACGTTATCCCGGGAAAATAAAAAACTCAAGATCGATGAAAATAAAAAACTCAAGATCAATGAAAGTTCTGCACGTAATGGAAATAAGCGTAGAACACAGTCTATAAATCTTACTTCGTACAAATGTTCAATCTGCTTTGGAATATACGCTTCTCAACACGGTTTGTACAAACATAAACGCATTCATAAAATCCGCGGGGAGACTAGAGAAAATTTTCATAGGTTTAAATGTAGATATCTTAATTCACCGCTAAACAAGAGATATCACTTACTCCAGTCTTCCGCAAAATCAACTGTCATTACAGGAAATAATAGCGGTAGCATAAAAAAAAGTGTAAAACTTAATAATTCTAAAGAAAATCAATTATTCCGGGAAGAAACATTCAATCCAAAGCGCAATGTGGTTAAGTCAGGTAGAAATATGACTAAAGACAGTAGAACTATTTGTTCATGTGGAAGATCTTTTCGTAATCCTCATACTTTGTTCATCCATAAAGAACAATGTAATTTTGATGCTCAAAAAAATAAAAAACCACAGACTATTAGAAAACGTAGTTATGATGATAAAGACCTTGGAAATGGTATTAATATAAAGATCAAAAAGCGAAATGACTCTTATGAAATAGTTAATAAGGATGTTGATGACAAATCCGATAAGTCTATCCAAATAGAAAACTCTTTTTCGGTTGCATCGTCCAAATCATCTGATCATGCCACCAAAGACAATACATCCACTAAATCAGAAGTAGATACAATTAAACCATCTGAATACAGTAAAGATCATAGCATAATGAAATTAGAAATTGTAGATGAAGATTTGGTTGTAGATATTGAAGATGATGTTGCAGTTAATACTGATAAAACCGACACAATAAAGCAGGTAACTGCACCAGAATGCGATGAAGAATATTTATTACAACAAGATCGAACAAATGATGAAAAAAATACAAACACTACAGTTTCTGACAAGATGTTAAAGGAAATGCATGATGACGTTTGTGAAGTTCTTGCAGAACATCAAGTAAAGAATACGCTAGAAGATAAAGTATTGAAAGATAATGTTCAAGAAAATAGTCAGACTAAAGAACAGAAAAGTAGTCCGATTAAAAGCCAAGAAATACACCAGGAGAATAAGATGGAGTTAAGATCTCGCAAACGATCACAAAGTGCCAATTTTGAGAATTTTGATGATACATTTACCAGAAGATATGATAGAGAATTTGACAGACCGCAACTTTATATGACAAAAATAGGTTCTTCTTTGAAGTGTGGATATTGTAATGAACAATTCAGCACTACTAATTCATATGATAGCCATCAGTGTGTCGTTAAAGAAGGGAAACCTTTTGATAGTTTTTCATTATATTTACCATGCTTCTATTGTAGCGAAGTGTTGAACACTTATCAAGAATATGATCAACATATGAGAATTAAACATTTGGATGACATGTATAATTGTTATCAATGTCCTGAACGATTCAGACACGACAAAGCACGATTAAATCACTTACAAAATTATCATGACGATATGTCTTGTAGAATTTGCAACAAGAAGATGAGCACCTCGACCAAAATTCTACATGAAAGTTATCATTTTGGCTTTGGATATCCTTGCCACAAATGTAAGAAAGCTTATACTAGTAAAAAGAATCTTTCCTATCACAAATCTACAATACATCCAGCCGGAGGTGATAGTCTAATAACTTGTAGCATATGTTTGAAATCTATAAAACTGAAAACTTTTCGGGGACATATGTCTACGCATAAACATAACGAATGTCATTTCTGTGGCAAAATGTTTTCTAATAGGACAGGAATAGAATATCATACAATGATATATCATGTTATTTTCTGTTGGTATATGAAATTCCTGCATTATCATTATAGCGACACAGATCAGAACAGAATTCTTTCTCCCGCGACCTGTGTCGCCACTGTCGGCGCGGACTTTACGGAAGCGGACGTGCTCAGCTACTTCAAGAACAAAAAATAA
- Protein Sequence
- MSTKAGNADACSLLGILYGEVSRYVLLHVTVRNQLWFFKLSEIAFSFRMNDNTTTAYEDKNDSDNTTSLLSDLTNIEVECKLEPSDHELTEDSPTYDEVLFHIPVFAPKIKNPIILLEKCDNIWKTLQLIKTVQPEQITSNEDYSKEEEKKENHNKEKEIKEEEEEEEIEEVEEVERMEGEEGEEEEEEKKEHLNETLQSVYYANRRFTKRERKKNTALLPFKFSVQSTRKVYPCLTCGKQYMERRSLRKHVWKIHGIFLPLIRKRVKTSANSTSASTISSKSPDKKDLVSSDVLLKKGNNSESHHIDENPHETITAAKAKVTKPSIMDTYVKCTLCKRRVSCLKKHLMSYHKIGANSSLMKQLESTVVENKVTPNKKTSLSNILSGKSPQTSTQNIQDSFRIMDNEDTEEIFPGTKKRRRTLSRENKKLKIDENKKLKINESSARNGNKRRTQSINLTSYKCSICFGIYASQHGLYKHKRIHKIRGETRENFHRFKCRYLNSPLNKRYHLLQSSAKSTVITGNNSGSIKKSVKLNNSKENQLFREETFNPKRNVVKSGRNMTKDSRTICSCGRSFRNPHTLFIHKEQCNFDAQKNKKPQTIRKRSYDDKDLGNGINIKIKKRNDSYEIVNKDVDDKSDKSIQIENSFSVASSKSSDHATKDNTSTKSEVDTIKPSEYSKDHSIMKLEIVDEDLVVDIEDDVAVNTDKTDTIKQVTAPECDEEYLLQQDRTNDEKNTNTTVSDKMLKEMHDDVCEVLAEHQVKNTLEDKVLKDNVQENSQTKEQKSSPIKSQEIHQENKMELRSRKRSQSANFENFDDTFTRRYDREFDRPQLYMTKIGSSLKCGYCNEQFSTTNSYDSHQCVVKEGKPFDSFSLYLPCFYCSEVLNTYQEYDQHMRIKHLDDMYNCYQCPERFRHDKARLNHLQNYHDDMSCRICNKKMSTSTKILHESYHFGFGYPCHKCKKAYTSKKNLSYHKSTIHPAGGDSLITCSICLKSIKLKTFRGHMSTHKHNECHFCGKMFSNRTGIEYHTMIYHVIFCWYMKFLHYHYSDTDQNRILSPATCVATVGADFTEADVLSYFKNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01271550; iTF_01270097;
- 90% Identity
- iTF_01270097;
- 80% Identity
- -