Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: salm_1
Assembly: GCA_014825455.1
Location: QVNV01004295.1:4630-15372[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.3e-05 0.0022 18.6 1.0 1 23 396 418 396 418 0.98

2 9 6.4e-06 0.00062 20.3 1.9 1 23 424 446 424 446 0.98

3 9 4.2 4.1e+02 2.0 3.3 3 23 812 832 811 832 0.92

4 9 4.1e-08 3.9e-06 27.3 0.6 1 23 838 860 838 860 0.97

5 9 0.0004 0.039 14.7 2.6 1 23 870 892 870 892 0.98

6 9 0.012 1.1 10.1 3.2 2 23 1180 1201 1179 1201 0.97

7 9 0.029 2.8 8.8 1.0 1 14 1207 1220 1207 1221 0.92

8 9 5.5e-07 5.3e-05 23.7 2.1 3 23 1423 1443 1421 1443 0.96

9 9 1.9e-07 1.8e-05 25.2 0.9 1 23 1449 1471 1449 1471 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.3e-05	0.0022	18.6	1.0	1	23	396	418	396	418	0.98
2	9	6.4e-06	0.00062	20.3	1.9	1	23	424	446	424	446	0.98
3	9	4.2	4.1e+02	2.0	3.3	3	23	812	832	811	832	0.92
4	9	4.1e-08	3.9e-06	27.3	0.6	1	23	838	860	838	860	0.97
5	9	0.0004	0.039	14.7	2.6	1	23	870	892	870	892	0.98
6	9	0.012	1.1	10.1	3.2	2	23	1180	1201	1179	1201	0.97
7	9	0.029	2.8	8.8	1.0	1	14	1207	1220	1207	1221	0.92
8	9	5.5e-07	5.3e-05	23.7	2.1	3	23	1423	1443	1421	1443	0.96
9	9	1.9e-07	1.8e-05	25.2	0.9	1	23	1449	1471	1449	1471	0.98

Sequence Information

Coding Sequence: ATGACGGTGGTGGTGGAAGTTTACTCTGGCATATCCCAGAGTGGTGGGACACAGAGAAAGCCGCCGCCGCCGGCGCCGTTAGGAGTAAAAGGGAGGGGAACTCAGCTTGGATGTATCGAAAAAAAAATGACTATAATTCATGAAGTTTTATCGTTTTGTGTTGCAGGAAGCATTGATGATTTTACGGACGGCGAAGAGAGTGGCGGTGGAGGAGCAGGTGGTGAAGAGGCTGTGGATCTCACGGCGACGAGATCTCATCAAAGCGATGAAGACGACAAAGACGCTGACGAGCCTCTGGAGGAGGACGAAGAAGAAGGCGTGGACGAACAGGATGAGCAGGATGAAGACGAGGAGGTTTCCTCACACATTCGGCATAAACAGGACGCAGAAAATAACAATAATTTTGTCCAGAGCGGTCCACCTCCCGCGATATTCCCACCCGCCGGAACTAATCATGTCACTCTCGAAGCTCTTCAAAACACAAAAGTGGCAGTTGCACAATTTGCCGCCACCGCTCTCGCCGGGACCGACAGCGAAGCAGCGCTGCAAGATTTGGCACTTCTGCATAGTACACTGTACACCTTACAGCATCAACAAGTATTCCAATTACAGTTAATCAGCCAACTTCAGCAACAGCTGTCTATTACTCACAGCCAATCAGCGCAGCCATCGTCGACGGAATCATCTGATACGAAAGAAATTTCATCACCTATTATTCAACCAAAACCATTATCGAGTCTTACATCACCTCCTTCTTCCCGGCCGCCGAGTCATCATCAGCAGACATCACCAACGCCAATGACGCCAAATTTGCCACAGGAACAGTCAACCTCCACGAGTAGCGCTTCTCCTTTGAATTTACCCCTGCCTTCGTCTAGTACCACTGCCACAACCACTGTCACGACTACTAGTAGTCAGGTTCCGCTCTCGCATCAAATGCCACTTTGTTCCATAAGCTCTTCCCTCGCCTCATCGATCATAACAAACACCGATCCGCCGCCACTCAACGAGCCAAATACTCTAGAGATGCTTCAAAAACGTGCCCAGGAAGTACTGGACAACGCGAGTCAAGGTCTCCTGGCCAACAATCTAGCTGACGAGCTCGCGTTCAGAAGCGGCAAGGGTTCACGACTTTCTCCTTTCGACTCGAAATCGAGCGGCAGCCGCAACGAGCCTTTCTTCAAGCATCGATGCCGCTTCTGCGGCAAGGTCTTCGGTAGCGACTCAGCGCTACAAATCCACATACGATCCCACACAGGTGAGCGACCCTATAAGTGCAACGTCTGCGGCAGCCGGTTTACCACCAAGGGCAATCTGAAGGTTCACTTCCAGAGACATACGGCCAAGTTTCCACACGTAAAGATGAATCCAAATCCTGTTCCAGAACATCTAGACAAATATCATCCGCCCCTTTTACAGCAAATTGCTTCTGGGCATAGACAGTCTTCGCCGCCACCGCCACCGCCGCCACCTTCCTCACATCATCCCACATTTCATCCGACAGCAGCACATAGTTTCCTACCGCCTCAACCACACTTACCACTCAGCCTCACCATGCCCCCCAGTATGCCTCCTCTTTATCGATCCCCACTTGTTAATCATCGGGACGATCAGGATATACCGGAAAATCTTAGTAAACAGTTACCTGTAACAGCTGCCCCTTTGACGTCTCCTTCTTCCCCTGTCACTATAAATTCTCGTCATTCCTTTCACGACAATCATCAACAACAGCAAAAGCAGCTCGAGCAAAGAGAAGAAATCAAACATGAACAGAGATCGCCCGAGCAGGAGCAGTACCAGCAACGACCGATGAGCCAAGAGAATACTGGACGAATAACTCCGAAGAAAGAACCTGAGGAAACGGAAGAACCTGCGGAAGAAGAAGGCGAAGACTTCGAGGAACAAACAAGGCGATTTCTTAATTCACCTCAATCTTCAGTAAATCCGTCGTCTCACCCGCAAACATACGAAGACTGTAGTATAGACAGTAAGATCAGTGGACGTTTAGAAGGCGATGGAGAAATGGAAGCAGACGAGGAAATGGAAGAACAACCAGAGAATCTCTCCAGCAGGGGTACGATCAATCGTTTACCTCAACAAATCGTGGCTTATCCAGGAGCATCTCCTGCCAGCAGTAGTGCGAGTAGCGGTAGTCTTCAGACATCTTTCGCCGGGATTCTGTTTGCAGGTACTCCGGCTCATCAAATACCTCACCTTCCTTCTGTTTCGACTACTGGATCGACGCCGACTGTTTCTACAAGTGAGATGATCGATCCAGCTAAAGATCCGGCAATCTATTCAAGTTTGCTACCTCGACCAGGCAGCAATGACAATTCTTGGGAAAGTCTGATTGAAATAACAAAAACTTCGGAGACGTCTAAACTGCAGCAACTGGTTGACAATATTGAACACAAGTTGAGCGATCCTAATCAGTGCATTGTTTGTCACAGAGTACTTTCTTGCAAGAGCGCGTTATTGATGCATTATCGTACGCACACGGGTGAACGTCCTTTTAAATGTAAGATTTGTGGTCGTGCCTTTACCACCAAGGGCAACTTGAAGACTCACATGGGAGTGCACAGAGCGAAGCCTCCACTGCGAGTATTACATCAATGTCCTGTGTGTCACAAGAAATTCGCGAATACTCTTGTACTTCAGCAACATATACGTCTTCATACTGGAGAACCTACTGATCTCAGTCCGGAACAAATTCAAGCTGCGGAAGTAAATGAATTTCCACCTGGTTATCCTCCTCATCCGTTGGCGTCTTTCTTACCACCAGGGTTTCCGATACATCCAACTGGAGCAGGCTTTCCCTTAGGATTTCCTTCATCCAGGCAACCAACTATCGAGCAATCGCATGAGATTGACATGGAAATGAAAGAAGAATCGCAGCAACAGAGACAGAGATTTGTGGAGGATCTCAACGAGGAAACAGAGGATCAAGAAGACGAGGAACAAGATCACAGAGTTGACGAAGAGAGAGATCGCGACAGACGTAGTGAGGAGGAAGAGGATCACGAGAATGAAGAGACTGAACACAAAGATATGACAATTCCTATGTTTTCAACATCATTAGGGGCCTTGGAAAACCAAGTGAGAACGATTTCGACGACAGCTGCGACTACGATGGCAAACGTATCTGAGTCGGCGTCTTTTCATCGGTACAACGGTAGCGAGAAAAGCAATAGTCCGCCAATCTCCGGCGCTCCGCTTGATTTAACACCTCGTGCTTCGTCTACACCAGCATCAGTGGCTTCAACGCCACCGACACCGCCACCTCAAACCGTGCCGCATCATCCACATCCCTTTGGCATGTTTGCGGGATTATTGCAAGCGGTATCTTCTGCTCCTACCACCAGCACGATTGGATCGTCGAATATAAACAGTGTTCCGTCAATGAACACCATCACTCCGGGAAACGGGCCCAGCAGTGGTCCGCTGGCTTCACTTACCACTTCAGCAGTACTAGCCGCATCATCGACTTACAATCCGCTCGGTCTGGCTGTTGGAGGGCCAGCAGTACGTGGAAACACTACATGTAAATTCTGCTACAAGACATTTGCGTGCCAATCTGCATTGGAGATTCATTATCGGAGTCATACGAAGGAGCGACCTTTCAAATGCACCATATGCGACCGAGGTTTTTCCACGAAGAACGACGATTCTGGTCAGCAAGTATGTTCCTGCGCGGACCAACCCTTCGCCGCGAAGGGTCCGATCCCTCCACAATCCATTTCCCAATATCGCTCGTTCTCGGCGAGATCAGCCGACGGAAATCGCGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAGCGGAAGAACCGGGGGCGGACAGGAACAGGAGGGGGTCGGAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTTCTGGGCAATATGAAGCAACATATGTTGACTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATGTGCACCGACGATTCAAGTCTACCGCCTCCGCCGCCGCCACCACCACCGCCGCCACCTCCACCATTACCACCGACATCCATCGAGTCTGCGATACCAGTAAAGAGATCTCCGCCGGAAGGAGATCTGCCAGCGCCAAAAAGACCAGCCAGCGTACCGAGCAAACACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATCCATATGAGAACTCACACTGGCGATAAACCATTTCGATGCACCGTCTGCCAGAAGGCGTTCACCACCAAAGGCAATCTCAAGGTGCACATGGGCACTCATATGTTCACCAACGGAACGTCACGTCGAGGTCGAAGGATGTCATTGGATCTACCTCCTCTGCCAATCACCCCCAAGGACTCGGAGTTTCTGCAGCGACGACCGGATCTTTTTTATCCATATCTTCCCGCGCCATTCCTTAACGGCGTTCAGCAGAAGCTGAACGAGATTTCGGTGATTCAAAGTAGCAACGGGTTACCGCCTCATTCCTTAGGCGCGGGCAAGTACGCGGCGAATTTGTTTGGTTCGGTGTACGGAACCGGCGGTGGTGGTTTTTCTCTGGACAAACAACCGATGGCGCCGAGCAGTAACGGACCATTGGTGGACGGCAAACCTGTTATTCCGTCGGGCTCAATGCTCTTCCAGACACCGTCGCCTTCGCACTCACCCGGTACGCCGTCGTCCAACAACGGTAATCAAAATTCTACCAGCGTGCCCTCCTGGACCGGCGATGTTCTTCAGCATCACTTCGATCGGGAAACACCAAACAGAACCGAGAACGACGCCACGCCGCCCACTGCACGGCTACCGCCGCCACCTACGAGAGGAGAAGGATTAGCCGCGTGA
Protein Sequence: MTVVVEVYSGISQSGGTQRKPPPPAPLGVKGRGTQLGCIEKKMTIIHEVLSFCVAGSIDDFTDGEESGGGGAGGEEAVDLTATRSHQSDEDDKDADEPLEEDEEEGVDEQDEQDEDEEVSSHIRHKQDAENNNNFVQSGPPPAIFPPAGTNHVTLEALQNTKVAVAQFAATALAGTDSEAALQDLALLHSTLYTLQHQQVFQLQLISQLQQQLSITHSQSAQPSSTESSDTKEISSPIIQPKPLSSLTSPPSSRPPSHHQQTSPTPMTPNLPQEQSTSTSSASPLNLPLPSSSTTATTTVTTTSSQVPLSHQMPLCSISSSLASSIITNTDPPPLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRSGKGSRLSPFDSKSSGSRNEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGHRQSSPPPPPPPPSSHHPTFHPTAAHSFLPPQPHLPLSLTMPPSMPPLYRSPLVNHRDDQDIPENLSKQLPVTAAPLTSPSSPVTINSRHSFHDNHQQQQKQLEQREEIKHEQRSPEQEQYQQRPMSQENTGRITPKKEPEETEEPAEEEGEDFEEQTRRFLNSPQSSVNPSSHPQTYEDCSIDSKISGRLEGDGEMEADEEMEEQPENLSSRGTINRLPQQIVAYPGASPASSSASSGSLQTSFAGILFAGTPAHQIPHLPSVSTTGSTPTVSTSEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFANTLVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYPPHPLASFLPPGFPIHPTGAGFPLGFPSSRQPTIEQSHEIDMEMKEESQQQRQRFVEDLNEETEDQEDEEQDHRVDEERDRDRRSEEEEDHENEETEHKDMTIPMFSTSLGALENQVRTISTTAATTMANVSESASFHRYNGSEKSNSPPISGAPLDLTPRASSTPASVASTPPTPPPQTVPHHPHPFGMFAGLLQAVSSAPTTSTIGSSNINSVPSMNTITPGNGPSSGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCTICDRGFSTKNDDSGQQVCSCADQPFAAKGPIPPQSISQYRSFSARSADGNREKPKRRRRRPEERKNRGRTGTGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLGNMKQHMLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMCTDDSSLPPPPPPPPPPPPPPLPPTSIESAIPVKRSPPEGDLPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSSNGLPPHSLGAGKYAANLFGSVYGTGGGGFSLDKQPMAPSSNGPLVDGKPVIPSGSMLFQTPSPSHSPGTPSSNNGNQNSTSVPSWTGDVLQHHFDRETPNRTENDATPPTARLPPPPTRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_01267761; iTF_01270715; iTF_01270047; iTF_01268480;
80% Identity: -