Basic Information

Insect: Pseudomyrmex gracilis
Gene Symbol: salm
Assembly: GCA_002006095.1
Location: NW:381659-437233[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8e-05 0.0011 18.6 1.0 1 23 377 399 377 399 0.98

2 9 5.2e-06 0.00031 20.4 1.9 1 23 405 427 405 427 0.98

3 9 3.4 2e+02 2.1 3.3 3 23 793 813 792 813 0.92

4 9 3.3e-08 1.9e-06 27.3 0.6 1 23 819 841 819 841 0.97

5 9 0.00032 0.019 14.7 2.6 1 23 851 873 851 873 0.98

6 9 0.0093 0.55 10.1 3.2 2 23 1162 1183 1161 1183 0.97

7 9 0.027 1.6 8.6 1.0 1 14 1189 1202 1189 1203 0.92

8 9 4.4e-07 2.6e-05 23.7 2.1 3 23 1412 1432 1410 1432 0.96

9 9 1.5e-07 8.9e-06 25.2 0.9 1 23 1438 1460 1438 1460 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8e-05	0.0011	18.6	1.0	1	23	377	399	377	399	0.98
2	9	5.2e-06	0.00031	20.4	1.9	1	23	405	427	405	427	0.98
3	9	3.4	2e+02	2.1	3.3	3	23	793	813	792	813	0.92
4	9	3.3e-08	1.9e-06	27.3	0.6	1	23	819	841	819	841	0.97
5	9	0.00032	0.019	14.7	2.6	1	23	851	873	851	873	0.98
6	9	0.0093	0.55	10.1	3.2	2	23	1162	1183	1161	1183	0.97
7	9	0.027	1.6	8.6	1.0	1	14	1189	1202	1189	1203	0.92
8	9	4.4e-07	2.6e-05	23.7	2.1	3	23	1412	1432	1410	1432	0.96
9	9	1.5e-07	8.9e-06	25.2	0.9	1	23	1438	1460	1438	1460	0.98

Sequence Information

Coding Sequence: ATGTCACGGAGAAAGCAAGCTCGACCAAGCCGTGCCCATCTTGAGGACGATCTTGTCCAGAGGCCTCTCCTGACCAATCCGACTGGAACTATCGCAAGCGAGATCCgaagagaagaaaatgatTTTACGGACGGCGAAGAGAGTGGCGGTGGAGGAGCAGGTGGTGAAGAGGCTGTGGATCTCACGGCGACGAGATCTCATCAAAGCGATGAAGATGACAAAGATGCTGACGAGCCCCTGGAAGAGGACGAAGAAGAAGGCGTGGACGAACAGGATGAGCAGGATGAAGACGAGGAGGTTTCCTCACATATTCGGCATAAACAAGACGCAGAAAACAACAATAACTTTGTCCAGAGCGGTCCACCTCCCGCGATATTCCCACCCGCCGGAACTAATCACGTCACTCTCGAAGCTCTTCAAAACACGAAAGTGGCAGTTGCGCAGTTTGCCGCCACCGCTCTCGCCGGGACCGACAGTGAAGCAGCGCTGCAAGATTTGGCACTTCTGCATAGTACACTGTACACCTTACAGCATCAACAAGTATTCCAATTACAGTTAATCAGCCAACTTCAGCAACAGCTGTCTATCACTCacagccaatcagcgcagccATCGTCGACGGAATCACCAGATACGAAAGAAATTTCATCACCTATTATTCAACCAAAACCATTATCGAGTCTTACATCACCTCCTTCTTCCCGGCCGCCGAGTCATCATCAGCAGACATCACCAACACCGCTGACGCCAAATTTGCCACAAGAACAGTCAACCTCCACGAGTAGCGCTTCTCCTTTGAATTTACCCCTGCCTTCGTCTAGTACCACTGCCACGACGACTGTCACGACTACTAGTAGTCAGGTTCCGCTCTCGCATCAAATGCCACTTTGTTCCATAAGTTCTTCCCTCGCCTCATCGATCATAACAAACACCGATCCGCCGCCACTCAACGAGCCAAATACTCTAGAGATGCTTCAAAAACGTGCCCAGGAAGTATTGGACAACGCGAGTCAAGGTCTCCTGGCCAACAATCTGGCTGACGAGCTCGCGTTCAGAAGCGGCAAGGGTTCGCGACTCTCTCCTTTCGACTCGAAATCGAGCGGCAGCCGCAACGAGCCTTTCTTCAAGCATCGATGCCGCTTCTGCGGCAAGGTCTTCGGTAGCGACTCAGCGCTACAAATCCACATACGATCCCACACAGGTGAGCGACCCTATAAGTGCAACGTCTGCGGCAGCCGGTTTACCACCAAGGGCAATCTGAAGGTTCACTTCCAGAGACATACGGCCAAGTTTCCACACGTAAAGATGAATCCAAATCCTGTTCCAGAACATCTAGACAAATATCATCCGCCCCTTTTACAGCAAATTGCTTCTGGGCATAGACCGtctccgccgccgccgccaccgccgccacctTCCTCACATCATCCCACATTTCATCCGACAGCAGCACATAGTTTCCTACCGCCTCAACCACACTTACCACTGAGCCTCACCATGCCCCCCAGTATGCCTCCTCTTTATCGATCCCCACTTGTTAATCATCGGGACGATCAGGATATACCGGAAAATCTTAGTAAACAATTACCTGTAACAGCTGCCCCTTTGACGTCTCCTTCTTCCCCTGTCACTATAAATTCTCGTCATTCCTTTCACGACAATCATCAACAACAGCAAAAGCAGCTCGAGCAAAGAGAAGAAATCAAACATGAACAGAGATCGCCCGAGCAGGAGCAGTACCAGCAACGACCGATGAGCCAAGAGAATGCTGAACGAATAACTCCGAAGAAAGAACCTGAGGAAACGGAAGAACCTGTGGAAGAAGAAAGCGAAGACTTCGAGGAACAAACAAGGCGATTTCTCGGTTCACCTCAATCCTCAGTAAATCCGTCGTCTCAACCGCAAACGTACGAAGACTGTAGTATAGACAGTAAGATCAGTGGACGTTTAGAAGGCGATGGAGAGATGGAACCAGACGAGGAAATGGAAGAACAACCGGAGAATCTTTCTAGCAGGGGTACGATCAGTCGCTTACCTCAACAAATTGTGGCGTATCCAGGAGCATCTCCTGCCAGCAGTAGTGCGAGTAGCGGTAGTCTTCAGACGTCTTTCGCCGGAATTCTGTTTGCAGGTACTCCGGCTCATCAAATACCTCACCTTCCTTCTGTTTCGACTACTGGATCGACGTCGGCTGTTTCTACAAATGAGATGATCGATCCAGCTAAAGATCCGGCAATCTATTCAAGTTTGCTACCTCGACCAGGTAGCAATGACAATTCTTGGGAAAGTCTgattgaaataacaaaaacttcaGAGACATCTAAGCTGCAGCAGCTGGTTGACAATATCGAACACAAGTTGAGCGATCCTAATCAGTGCATTGTTTGTCACAGAGTACTTTCTTGCAAAAGCGCATTATTGATGCATTATCGCACTCACACGGGTGAACGTCCTTTTAAGTGTAAGATTTGTGGTCGTGCCTTTACCACCAAGGGCAATTTGAAGACTCACATGGGAGTGCACAGAGCGAAGCCTCCACTGCGGGTATTACATCAATGTCCTGTGTGTCACAAGAAATTCGCGAATACTCTTGTACTTCAACAACATATACGTCTTCATACTGGGGAACCTACTGATCTCAGTCCGGAACAAATTCAAGCTGCGGAAGTAAATGAATTTCCACCTGGTTATCCTCCTCATCCGTTGGCGTCTTTCTTGCCACCAGGGTTTCCGATACATCCAACTGGAGCAGGCTTTCCCTTAGGATTTCCTTCATCCAGGCAACCAACTATTGAACAACAATCGCATGAGATTGACATGGAAATGAAAGAAGAATCGCAGCAACATAGGCAGAGATTTGTGGAGGATCTCAACGAGGAAACAGAGGATCAAGAAGATGAGGAACAAGATCACAGAGTGgacgaagagagagatcgcgacAGACGTAgtgaagaggaagaagatCACGAAAATGAAGAGACTGAACACAAAGATGTGACACTTCCTATGTTTTCAACGTCATTAGGGGCCTTGGAAAACCAAGTTAGAACCATCTCGACGACGGCTGCGACTACGATGGCAAACGTATCTGAGTCGGCGTCCTTTCATCGATACAACGGTAGCGAGAAAAGCAACAGTCCGCCAATTTCCGGCACCCCGCTCGATTTAACACCCCGTGCTTCGTCTACACCAGCATCAGTGGCTTCAACGCCACCGACACCGCCACCTCAAACCGTGCCGCATCATCCACATCCCTTCGGCATGTTTGCGGGATTACTGCAAGCGGTATCTTCTGCTCCTACCACCAGCACGATTGGATCGTCGAATATAAACAGCGTTACGTCAATGAACACCATCAATCCTGGAAACGGGCCTAGCAGCGGTCCGCTGGCTTCACTTACCACTTCAGCAGTACTAGCCGCATCATCGACTTACAATCCGCTCGGTCTGGCTGTTGGAGGGCCAGCAGTACGTGGAAACACTACATGTAAATTCTGCTACAAGACATTCGCGTGCCAATCTGCGTTGGAGATTCATTATCGGAGTCATACGAAGGAGCGACCTTTCAAATGCAGCATATGTGACCGAGGTTTTTCCACGAAGAACGACGATTCTGGTCAGCAAGTATGTTCCTGCGCGGACCAACCCTTCGCCGCGAAGGGTCCGATCCCTCCACAATCCATTTCCCAATATCGCCCGTTCCCGGCGAGATCAACCGACGGAAATCGCGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAGCGGAAGAACCGGGGGCGGACAGGAACAGGAGGGGGTCGAAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTTCTGGGCAATATGAAGCAACATATGTTGACTCACAAGATTCGCGATATGCCGCCGCATCTGTTCAATGACGCCAAGcatcagcagcagcagcagcagcagcaacaacagcaacaacaacagcagcaacagcaacaacagcagcaatcTCAGGATCACGAAACTTCCAGAAGCCCGATGTGCACCGACGATTCAAGTCTACCGCCTccaccgccgccaccaccgccgccgccacctccACCATTACCACCGACATCCATCGAGTCTGCGATACCAATAAAGAGATCTCCGCCGGAAGGAGATCTGCCAGCACCAAAAAGACCAGCCAGCGTACCGAGCAAACACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCATCTTCGGCGCTCCAGATCCATATGAGAACTCACACTGGCGATAAACCATTTCGATGCACCGTCTGCCAGAAGGCGTTCACCACCAAAGGCAATCTCAAGGTGCACATGGGCACTCATATGTTCACCAACGGAACGTCACGTCGAGGTCGAAGGATGTCGTTGGATCTGCCTCCTCTGCCAATCACCCCCAAGGACTCGGAGTTTCTGCAGCGACGACCGGATCTTTTTTATCCATATCTTCCCGCGCCATTCCTTAACGGCGTCCAGCAGAagCTGAACGAGATTTCGGTGATTCAAAGTAGCAACGGATTACCGCCTCATTCCTTAGGCGCGGGCAAGTACGCGGCGAATCTGTTTGGTTCGGTTTACGGAACCGGCGGTGGAGGTTTTTCTCTGGACAAACAACCGATGGCGCCGAGCAGTAACGGACCATTGGTGGACGGCAAACCTGTGATTCCCTCGGGGTCTATGCTCTTCCAGACACCGTCGCCTTCGCACTCACCCGGCACGCCATCGTCCAACAACGGTAATCAAAATTCTACCAGCATGCCCTCCTGGACCGGCGATGTTCTTCAGCATCACTTCGATCGGGAAACACCAAACAGAACCGAGAACGACGCCACGCCGCCCACTTCACGGCTACCACCGCCACCGACAAGAGGAGAAGGATTAGCCGCGTGA
Protein Sequence: MSRRKQARPSRAHLEDDLVQRPLLTNPTGTIASEIRREENDFTDGEESGGGGAGGEEAVDLTATRSHQSDEDDKDADEPLEEDEEEGVDEQDEQDEDEEVSSHIRHKQDAENNNNFVQSGPPPAIFPPAGTNHVTLEALQNTKVAVAQFAATALAGTDSEAALQDLALLHSTLYTLQHQQVFQLQLISQLQQQLSITHSQSAQPSSTESPDTKEISSPIIQPKPLSSLTSPPSSRPPSHHQQTSPTPLTPNLPQEQSTSTSSASPLNLPLPSSSTTATTTVTTTSSQVPLSHQMPLCSISSSLASSIITNTDPPPLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRSGKGSRLSPFDSKSSGSRNEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGHRPSPPPPPPPPPSSHHPTFHPTAAHSFLPPQPHLPLSLTMPPSMPPLYRSPLVNHRDDQDIPENLSKQLPVTAAPLTSPSSPVTINSRHSFHDNHQQQQKQLEQREEIKHEQRSPEQEQYQQRPMSQENAERITPKKEPEETEEPVEEESEDFEEQTRRFLGSPQSSVNPSSQPQTYEDCSIDSKISGRLEGDGEMEPDEEMEEQPENLSSRGTISRLPQQIVAYPGASPASSSASSGSLQTSFAGILFAGTPAHQIPHLPSVSTTGSTSAVSTNEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFANTLVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYPPHPLASFLPPGFPIHPTGAGFPLGFPSSRQPTIEQQSHEIDMEMKEESQQHRQRFVEDLNEETEDQEDEEQDHRVDEERDRDRRSEEEEDHENEETEHKDVTLPMFSTSLGALENQVRTISTTAATTMANVSESASFHRYNGSEKSNSPPISGTPLDLTPRASSTPASVASTPPTPPPQTVPHHPHPFGMFAGLLQAVSSAPTTSTIGSSNINSVTSMNTINPGNGPSSGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCSICDRGFSTKNDDSGQQVCSCADQPFAAKGPIPPQSISQYRPFPARSTDGNREKPKRRRRRPEERKNRGRTGTGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLGNMKQHMLTHKIRDMPPHLFNDAKHQQQQQQQQQQQQQQQQQQQQQQSQDHETSRSPMCTDDSSLPPPPPPPPPPPPPPLPPTSIESAIPIKRSPPEGDLPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSSNGLPPHSLGAGKYAANLFGSVYGTGGGGFSLDKQPMAPSSNGPLVDGKPVIPSGSMLFQTPSPSHSPGTPSSNNGNQNSTSMPSWTGDVLQHHFDRETPNRTENDATPPTSRLPPPPTRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_01271429;
80% Identity: -