Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: -
Assembly: GCA_014825455.1
Location: QVNV01007698.1:11532-13817[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.5 5.3e+02 1.7 1.9 3 11 187 195 185 205 0.80

2 14 0.009 0.87 10.4 2.0 2 23 222 244 221 244 0.96

3 14 0.0005 0.048 14.4 0.2 1 23 250 272 250 272 0.97

4 14 3.6e-06 0.00035 21.1 2.6 1 23 278 300 278 300 0.96

5 14 0.00013 0.013 16.2 5.5 1 23 309 331 309 331 0.97

6 14 0.0016 0.16 12.8 4.0 1 23 337 359 337 359 0.98

7 14 5.3e-07 5.1e-05 23.8 1.0 1 23 364 386 364 386 0.98

8 14 0.022 2.2 9.2 5.7 1 23 393 415 393 415 0.97

9 14 1.5e-06 0.00015 22.3 0.6 2 23 435 456 434 456 0.97

10 14 0.0002 0.02 15.6 0.2 2 23 464 486 463 486 0.96

11 14 0.0083 0.8 10.6 2.3 1 23 492 514 492 514 0.97

12 14 0.00048 0.047 14.4 5.8 1 23 520 542 520 542 0.98

13 14 0.00042 0.041 14.6 2.9 1 23 548 570 548 570 0.97

14 14 6.3e-06 0.00061 20.4 1.0 1 23 576 598 576 598 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.5	5.3e+02	1.7	1.9	3	11	187	195	185	205	0.80
2	14	0.009	0.87	10.4	2.0	2	23	222	244	221	244	0.96
3	14	0.0005	0.048	14.4	0.2	1	23	250	272	250	272	0.97
4	14	3.6e-06	0.00035	21.1	2.6	1	23	278	300	278	300	0.96
5	14	0.00013	0.013	16.2	5.5	1	23	309	331	309	331	0.97
6	14	0.0016	0.16	12.8	4.0	1	23	337	359	337	359	0.98
7	14	5.3e-07	5.1e-05	23.8	1.0	1	23	364	386	364	386	0.98
8	14	0.022	2.2	9.2	5.7	1	23	393	415	393	415	0.97
9	14	1.5e-06	0.00015	22.3	0.6	2	23	435	456	434	456	0.97
10	14	0.0002	0.02	15.6	0.2	2	23	464	486	463	486	0.96
11	14	0.0083	0.8	10.6	2.3	1	23	492	514	492	514	0.97
12	14	0.00048	0.047	14.4	5.8	1	23	520	542	520	542	0.98
13	14	0.00042	0.041	14.6	2.9	1	23	548	570	548	570	0.97
14	14	6.3e-06	0.00061	20.4	1.0	1	23	576	598	576	598	0.98

Sequence Information

Coding Sequence: ATGAACATCGTCTGTGCTGTATTAAAGTCTAATATAAACGAAAGAGATTCAACAAATATTTTCGAAAAGTCCTATCATCTCCAAGAAGTGGATGTGCCATTGTCATATAATGCAACCAAGTATCATGATATCAAAAATGTTTGTCGAATCTGTGGTGGATCAGCTGTGCAAGGAGTAGATATTTTTTCAGACAAAGGTGTAGAACTCAAATTAAAAGAGAAAATAAATTTACACATGCCTATCTCAATTGACACAGTGGATCCTTCCACACCTCAGAGGATATGTACTGATTGCTGCAATAATTTAGAAATTACACACTTGTTGATTGTTTCATGTTTAAGAACTGATATGCGATTGAAGAGATTGTTGAATTTTGCAGGAGAGCCAGAATATGAGAACAAATATGGTGCACTAGTTCAGGAATGTTCATTAGAGATAGCACAAGAAATATGGAACAATGATATGTGTTTTGACTCTACATTACTTTCTGGAAGTAATAGAGTAAATTTTGACACAGATGTAGCTTCAAAGACAATATCTAATCTTGATGGCTCACATTGTTCAATATGCAATCAATCGTTTGAATGTCGGCAAGATTACGATAATCATGAGCATTTTCAAAGCAATGTCGAACCAAACAAAATGTCTCATGAAAAAAGTATAAGATGCGGAAACTGCAAGGAAGTTTATCACGACAAAAGAGAATTTTCAAAACATATTTCGAAATTGCATGAAGGACGATTGCTATACATGTGTTCCACGTGCGAGAGAACTTACGAGAAGTGGTCCAGCTTGGACGTTCACGAAGCTACTCACAAGACGGACAAGCTTTACCTCTGCGATCTGTGCGGGAAGAGTTTCAAGCATTCCAATAATTTGAGAGGTCACAAGAGAATTCATCTGGATGAATCTGTGAAGAAGAGACACGTGTGCGCAATTTGTGGCAATTCATTTAGATCACGATTTCACTTGCGAGAGCATATGAATCACCACGATGGCTTCAGACCGTATTCTTGCGATCAGTGTGCGAAGTCTTTTCACAAGAGAATCCAATTGAGACAGCATAAATTGACACACGGATCTAACAGGCACAAATGTCCAATCTGCGGCGTAACGTTTAATCGAAAAGGAAACATGAACGCGCACGTGAAACGGCATAGTAACGAACATGGAACATACACATGTAGCGTCTGTTCTTGTAAGTGTAAGTCTATGAGTGAACTGCAGATACATAGGAAAGATCACAGCCAGGAGGAAATAATAGACAGCATTAAGAAGAAATACACGGACAAGGAACTTTGGAAGTGCAGCGTTTGCAGCAAAGTGTTCTCGAAGCGCGCTAATTTAACGAATCACGAGCGTGTACACAAAGACGACAGATTGCGCGTAGAGTGCAACGAATGCGGCAAGGAATTAGCGAGCAGAAGCTCGTTGATGTATCACAAGAAATCGATACATCTGAAAGAAAGATCGCACATGTGCCACTACTGCGGAGACTCGTTTGTTTCGAGAGAGGCACGACTGATTCACGAGAGAACGCATACCGGCGAGCGTCCGTACGTGTGCACGGTGTGTGGAAAACGGTACAGATGCTCCAGCAATCTCTGTCAGCACACAAAGATCCACACCGGTCTGAAGCTATACAAGTGCCGTTGCTGTAACAAGGATTTTACGCGCAAAGGTGCGCTGACTGTGCACGAGAGGATTCACACGGGCGTCAAGCCGTACTCCTGTGTAATCTGCGATAAGAACTTTACGCAGAAGAACGATATGTTGAGGCACGCCAAGACACACGGTGCTAAATCGACACAGCGCGACCAAAGTAATCAGGACTCCGAACAGATAGAAGATGAAGTACAACGTAGTGCCACGCACGAGCAGAACGCTTCAACGATTTCGGATTACGTCAGCTCGCCACCGCATATCCTTCAGACTTACATCACTCTTGCTTCTTCAGAAATATAA
Protein Sequence: MNIVCAVLKSNINERDSTNIFEKSYHLQEVDVPLSYNATKYHDIKNVCRICGGSAVQGVDIFSDKGVELKLKEKINLHMPISIDTVDPSTPQRICTDCCNNLEITHLLIVSCLRTDMRLKRLLNFAGEPEYENKYGALVQECSLEIAQEIWNNDMCFDSTLLSGSNRVNFDTDVASKTISNLDGSHCSICNQSFECRQDYDNHEHFQSNVEPNKMSHEKSIRCGNCKEVYHDKREFSKHISKLHEGRLLYMCSTCERTYEKWSSLDVHEATHKTDKLYLCDLCGKSFKHSNNLRGHKRIHLDESVKKRHVCAICGNSFRSRFHLREHMNHHDGFRPYSCDQCAKSFHKRIQLRQHKLTHGSNRHKCPICGVTFNRKGNMNAHVKRHSNEHGTYTCSVCSCKCKSMSELQIHRKDHSQEEIIDSIKKKYTDKELWKCSVCSKVFSKRANLTNHERVHKDDRLRVECNECGKELASRSSLMYHKKSIHLKERSHMCHYCGDSFVSREARLIHERTHTGERPYVCTVCGKRYRCSSNLCQHTKIHTGLKLYKCRCCNKDFTRKGALTVHERIHTGVKPYSCVICDKNFTQKNDMLRHAKTHGAKSTQRDQSNQDSEQIEDEVQRSATHEQNASTISDYVSSPPHILQTYITLASSEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01270682;
90% Identity: iTF_01269230;
80% Identity: -