Pelo024967.1
Basic Information
- Insect
- Pseudomyrmex elongatus
- Gene Symbol
- -
- Assembly
- GCA_014825605.1
- Location
- QVNY01015096.1:718-2987[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0033 0.68 11.9 2.8 2 23 223 245 222 245 0.96 2 13 0.0004 0.082 14.8 0.2 1 23 251 273 251 273 0.97 3 13 3.9e-06 0.00081 21.1 2.6 1 23 279 301 279 301 0.96 4 13 0.00015 0.03 16.2 5.5 1 23 310 332 310 332 0.97 5 13 0.0018 0.36 12.8 4.0 1 23 338 360 338 360 0.98 6 13 5.7e-07 0.00012 23.8 1.0 1 23 365 387 365 387 0.98 7 13 0.024 4.9 9.2 5.7 1 23 394 416 394 416 0.97 8 13 1.7e-06 0.00034 22.3 0.6 2 23 436 457 435 457 0.97 9 13 0.00022 0.046 15.6 0.2 2 23 465 487 464 487 0.96 10 13 0.009 1.8 10.6 2.3 1 23 493 515 493 515 0.97 11 13 0.0014 0.29 13.1 6.3 1 23 521 543 521 543 0.98 12 13 0.00046 0.095 14.6 2.9 1 23 549 571 549 571 0.97 13 13 3.6e-06 0.00075 21.2 0.5 1 23 577 599 577 599 0.98
Sequence Information
- Coding Sequence
- ATGAACATCGTTTGTGCTGTATTGAAGTCTAATATAAACGAAAGAGATTCAATAAATATTTTCGAGAAGTCTTATCATCTCCAAGAAGTAAATGTGCCATTGTCATATAATGCAACCATGTATCATAATATCAAAAATGTTTGTCGAATCTGTGGTGGACCAGCTGTGCAAGGAGTAGATATTTTTTCAGACAAAGGTGTAGAACTCAAATTAAAGGAGAAAATAAATTTACACATGCCTATCTCAATTGACACAGTGGATCCCTCTACACCGCAGAGGATATGTACGGACTGCTGCAATAATTTAGAAATTACACACTTGTTGATTGTTTCATGTTTAAGAACTGATATGCGATTAAAGAGGTTGTTGAATTTTGCAGGAGAGCCAGAATATGAGAACAAATACAGTACACTAGTTCAGGAATGTTCATTAGAGATAGCACAAGAAATATGGAGTAATGATAGTATATGTTTTGACTCTACATTATTTTCTGGAAGTAATAGAGTAAATTCTGACACAGATGTAGCTTCAAAGACAACACCTAATCTTGATGGCTCACATTGTTCAATATGCAATCAGTTGTTTAAATGTCAGCAAGATTACGATAATCATGAGCATGTTCAAAGCAATGTTGAACCAAACAAAATGTCTCATGAAAGAAGTATAAGATGCGGAAACTGCAAGAAAGTTTATCACGACAAAAGAGAATTTTCAAAACATATTTCGAAATTGCATGAAGGACAATTGCTGTACATGTGCTCCATGTGTGAGAGAACTTATGAGAAATGGTCCAGCTTGGACGTTCACGAAGCTACTCACAAGACGGACAAGCTTTACCTCTGCGATCTGTGCGGGAAGAGTTTCAAGCATTCCAATAATTTGAGAGGTCACAAGAGAATTCATCTAGATGAATCTGTGAAGAAGAGACACGTGTGCGCAATTTGTGGCAATTCATTTAGATCACGATTTCACTTGCGAGAGCATATGAATCACCACGATGGCTTCCGACCGTATTCTTGCGATCAGTGTGCGAAGTCTTTTCACAAGAGAATCCAATTGAGACAGCATAAATTGACACACGGGTCTAACAGGCACAAATGTCCAATCTGCGGCGTAACGTTTAATCGAAAAGGAAACATGAACGCGCACGTGAAACGGCATAGTAACGAACATGGAACATACACATGTAGCGTCTGTTCTTGTAAGTGTAAGTCTATGAGTGAACTGCAGATACATAGGAAAGATCACAGCCAGGAGGAAATAATAGACAGCATTAAGAAGAAATACACGGATAAGGAACTTTGGAAGTGCAGCGTTTGCAGCAAAGTATTCTCGAAGCGCGCTAATTTAACGAATCACGAGCGTGTACACAAAGACGACAGATTGCGCGTAGAGTGCAACGAATGCGGCAAGGAATTAGCAAGCAGAAGCTCGTTGATGTATCACAAGAAATCGATACATCTGAAAGAAAAGTCGCACATGTGCCACTATTGCGGAGACTCGTTTGTTTCGAGAGAGGCACGACTGATTCACGAGAGAACGCACACCGGCGAACGTCCGTACGTGTGTATGGTGTGTGGCAAACGGTACAGATGCTCCAGCAATCTCTGTCAGCACACAAAGACCCACACCGGTCTGAAGCTATACAAGTGCCGTTGCTGTAACAAGGATTTTACGCGCAAAGGTGCGCTGACTGTGCACGAGAGGATTCACACGGGCGTCAAGCCGTACTCCTGTGTAATCTGCGATAAGAGCTTCGCGCAGAAGAACGATATGTTGAGGCACGCCAAGACACACAGTGCCAAATCGACACAGCGCGACCAAAGTAATCAGGACTCCGAACAGAGAGAAGATGAAGTAGAACGTAGTGCCACGCACGAGCAGAATGCTTCAACGATTTCGGACTACGTCAGCTCGCCACCGCATATCCTTCAGACTTACATCACTCTTACTTCTTCAGAAATATAA
- Protein Sequence
- MNIVCAVLKSNINERDSINIFEKSYHLQEVNVPLSYNATMYHNIKNVCRICGGPAVQGVDIFSDKGVELKLKEKINLHMPISIDTVDPSTPQRICTDCCNNLEITHLLIVSCLRTDMRLKRLLNFAGEPEYENKYSTLVQECSLEIAQEIWSNDSICFDSTLFSGSNRVNSDTDVASKTTPNLDGSHCSICNQLFKCQQDYDNHEHVQSNVEPNKMSHERSIRCGNCKKVYHDKREFSKHISKLHEGQLLYMCSMCERTYEKWSSLDVHEATHKTDKLYLCDLCGKSFKHSNNLRGHKRIHLDESVKKRHVCAICGNSFRSRFHLREHMNHHDGFRPYSCDQCAKSFHKRIQLRQHKLTHGSNRHKCPICGVTFNRKGNMNAHVKRHSNEHGTYTCSVCSCKCKSMSELQIHRKDHSQEEIIDSIKKKYTDKELWKCSVCSKVFSKRANLTNHERVHKDDRLRVECNECGKELASRSSLMYHKKSIHLKEKSHMCHYCGDSFVSREARLIHERTHTGERPYVCMVCGKRYRCSSNLCQHTKTHTGLKLYKCRCCNKDFTRKGALTVHERIHTGVKPYSCVICDKSFAQKNDMLRHAKTHSAKSTQRDQSNQDSEQREDEVERSATHEQNASTISDYVSSPPHILQTYITLTSSEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01270682;
- 90% Identity
- iTF_01269980; iTF_01267742; iTF_01268460; iTF_01271408; iTF_01267035;
- 80% Identity
- -