Ppal018886.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex pallidus
Gene Symbol
-
Assembly
GCA_014825455.1
Location
QVNV01009240.1:12596-15268[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 3.6e-05 0.0035 18.0 4.6 2 23 355 376 354 376 0.97
2 15 3.9e-05 0.0038 17.9 0.4 2 23 382 403 381 403 0.96
3 15 3.2e-05 0.0031 18.2 0.9 2 23 488 509 487 509 0.97
4 15 1.1e-05 0.0011 19.6 4.7 1 23 515 537 515 538 0.96
5 15 7.3e-05 0.007 17.0 0.2 1 23 543 565 543 565 0.97
6 15 6.8e-07 6.6e-05 23.4 0.5 1 23 582 604 582 604 0.98
7 15 1.2e-06 0.00012 22.6 1.2 1 23 610 632 610 632 0.97
8 15 9.1e-06 0.00089 19.9 2.4 1 23 638 660 638 660 0.98
9 15 0.0013 0.12 13.1 0.2 1 23 666 688 666 688 0.99
10 15 8.3e-05 0.0081 16.8 0.2 3 23 696 717 695 717 0.96
11 15 1.8e-05 0.0018 18.9 1.3 1 23 723 745 723 745 0.98
12 15 0.0004 0.039 14.7 4.7 1 23 751 773 751 773 0.98
13 15 5.1e-06 0.00049 20.7 0.4 1 23 779 802 779 802 0.97
14 15 1.4e-06 0.00013 22.5 0.5 1 23 808 830 808 830 0.97
15 15 4.4e-06 0.00043 20.9 5.0 1 23 836 858 836 858 0.99

Sequence Information

Coding Sequence
ATGAGCAAAGATATGCCGTTGGGCATAGAATGGATTCCAAAAGATGCGTACACACACAATTCTCTGGATCATTTTCTGCCGGGAGATCAAGACGGACGCAATGTTGTATTTATAAAACAAGAACCTGAGTTCTTGGAAAAAGCATTGAACACACAAACTTTGAAAAACATGCTTGTTACCATGCAAGTCCCTGAATCTAAGGACGAAGATGAGATCAAACAACAAAACTGTCAGGAAACACCAGCGACTCAATGTCAAACAGAATCTCCGAAAGTGATGCCGGAACAATTAACTGAGACTTCCAAGAAATCATACAACAAAGCTCGCATTGACGTAACAGAGATCTCAGCAGAATCCGCATCTGAATATCGATACTTTTTCACTTACGAAGATCAATCGTCCAAATTCACAGTGCTAAGAGCTCTTCGCGGTAACACTGCCAAAGAAGTTGCGGCAAAATTGTTAGATGTGTTGGCGATTATAGGGGCGCCAAGAGTGTTGCGAAGCGGCAATGGACGTAAGTTTGCCGAACAAGTTGTGCGCGAACTGCGTTCGCTTTGCAAGAATTTCTTCATATTACACGGGGAATTGCCTAAATCCGAAGTTAGCTGCAGGGATTTTAAGAGTTTGCTCGAATCCTGGATGAGGGAGAATTCGACCAGAATCTGGTGGGAGGGTTTGAATTTCGTACAGATGCTTCACAATACGACGTATCACTGTCCGAATGGAAGAGTTCCGTGTGATATGTTGTTTGGACGAAATGTACGCGATAAGTTTCAAAATACTTGCGCGGAAAAGGATACGGAGAATGTGTGGACGGAAGAAAATTGGATCGAGAGTTCGTCGATCGATTCCTTATCGGTGGTTCGTGAGGAAAATGAAAACGTACAAGAAGCACAAAGTCAAAATGCGTCTTCGAGAGACGACGACGGCGTAAACGGTTTTAGTTTCGTCGATGTAAAACACGAAGCTCTCGTGAGCAATAAGCGCAGAACGGAATGTGCGGATGATGAGACAGACGCGAGAATCGAATCGAAAAGTAACGATAACGCTCAATCTCTCAAGTGCAAATATTGTCAGAAACAATACGCGAGACTCGGACATTACAAGAATCACATGAAGACTCACAGAGCAGAACAACTGCGATGTAAGTTGTGCGGCAAAAGTTTTAGGGTTCCGAGATTGTACGAGAAGCACGTTGCGTCACACGGACAGGACAAATTAAATAACAAGGAAGAAGTCAATGAAAATATCAACGGCGACGCGTTAACGGCCGGGCTTAAGGAGGAAAAATGTCAAGCAAAAACACGCGAAATATCCAAGATAGCGAATGAAGATCGTGACACGTTACTGGTTACGAAAGATTCCTGTGATAAAATCGCTGAGAACTCGAGTCAAACCGCAAGACGAAAGTTGTCCGCGGAAAGCAGCGTTCGCGTGCCGAAGGCGCAATCGCCCCTAGAGTGTACGTACTGCAAGCAGAAGTTCAGCTTTCCGAGCGTGCTGGTAAGACACTTGCGGTCGCACACAAATGAGCGACCGTACGTATGCAAGATCTGCAACAAGAGCTTCAAACAGCTGGGACATCTGAGCCAACACTCTCTGACGCATCACGACTATCGCTCGTTCCAGTGCGCGGTTTGCGGTGTGAAGTTCGAGTCGCTGGACTCTCTGAAGAAACACGCGAGCTCGCACGAGGGCGATGGTGCAATGACAACGCCCAGGATTCGCGAGTATCGCGTGTTCGAGTGCGACACCTGCAAGAAGGTGTTCGCGACGAAGAGCGTCTTGGAGCGGCACATACTCACGCACACGCAGGAGCGTCAGTACGATTGTAAGGTATGCGGCAAACGCTTCAAGCAGGCCGGTCATGTGAAATCGCACATGCTGATACACACCGGCGAGCGTCGCTTCCAGTGCACCGTTTGCTCGAAGCGCTTCAGCCTGTCCAACTCGCTGAAGAAGCACATGTACGTGCACAATGGCGAGAAGCCGTATCAGTGCGACGTGTGCGGCGCCCGGTTTCTGGAAAAGCGAAATCTCAACGGCCACCTGCTTACGCACACCAATGAGCGTCCGCACGGTTGCAAGATATGCGGCAAACGTTACACCCTGGCCGATACTCTGCGACGTCACGTGAGCGTCGCGCACAAGGACGGTCGCACTTATCAGTGCGAGATCTGCGCGAAGATGTTCAAGCAGCTCGCCCATCTGTCGGTGCACAAAAAGGTTCACAACGACGAGCGGCCGTTTCAATGTCACTTGTGCGAGAAGAATTTCAAGCACAAAAACGTGCTCAAGTCGCATCTGGCGATTCACGCAAACGTACGGCCGTTCGAGTGTGATGTGTGCAAAGCCACCTTCGTGAGGAAGACGAACTTGCAGACGCACATCTCGTCCGCACACATGAACGAGCGTCCGTACGTATGCAATATCTGCGGCAAACGTTTCAAACAGATCAGTCATTTAAACGGCCACGTGATTGTGCACAGCAATCTGATGCCCTACAAATGTGACTTCTGCGATCGTCGATGCAATCGACTCGACAATCTGAAGAAACACATGCGTCTTCATACGAAGAACAAAGAGTGA
Protein Sequence
MSKDMPLGIEWIPKDAYTHNSLDHFLPGDQDGRNVVFIKQEPEFLEKALNTQTLKNMLVTMQVPESKDEDEIKQQNCQETPATQCQTESPKVMPEQLTETSKKSYNKARIDVTEISAESASEYRYFFTYEDQSSKFTVLRALRGNTAKEVAAKLLDVLAIIGAPRVLRSGNGRKFAEQVVRELRSLCKNFFILHGELPKSEVSCRDFKSLLESWMRENSTRIWWEGLNFVQMLHNTTYHCPNGRVPCDMLFGRNVRDKFQNTCAEKDTENVWTEENWIESSSIDSLSVVREENENVQEAQSQNASSRDDDGVNGFSFVDVKHEALVSNKRRTECADDETDARIESKSNDNAQSLKCKYCQKQYARLGHYKNHMKTHRAEQLRCKLCGKSFRVPRLYEKHVASHGQDKLNNKEEVNENINGDALTAGLKEEKCQAKTREISKIANEDRDTLLVTKDSCDKIAENSSQTARRKLSAESSVRVPKAQSPLECTYCKQKFSFPSVLVRHLRSHTNERPYVCKICNKSFKQLGHLSQHSLTHHDYRSFQCAVCGVKFESLDSLKKHASSHEGDGAMTTPRIREYRVFECDTCKKVFATKSVLERHILTHTQERQYDCKVCGKRFKQAGHVKSHMLIHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPHGCKICGKRYTLADTLRRHVSVAHKDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYVCNICGKRFKQISHLNGHVIVHSNLMPYKCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267008;
90% Identity
iTF_01267720;
80% Identity
-