Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: -
Assembly: GCA_014825455.1
Location: QVNV01000990.1:75134-85335[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.6e-05 0.0045 17.7 1.4 1 23 371 393 371 393 0.96

2 18 8e-06 0.00078 20.0 1.9 1 20 399 418 399 421 0.94

3 18 1.1e-05 0.0011 19.6 1.4 1 23 427 449 427 449 0.98

4 18 6.6e-05 0.0065 17.2 4.4 1 21 455 475 455 477 0.95

5 18 9e-06 0.00087 19.9 5.6 1 23 483 505 483 505 0.99

6 18 2.1e-05 0.002 18.8 5.3 1 23 511 533 511 533 0.97

7 18 7.8e-05 0.0075 16.9 6.9 1 23 539 561 539 561 0.96

8 18 7.6e-08 7.4e-06 26.4 2.7 1 23 567 589 567 589 0.98

9 18 5.6e-05 0.0055 17.4 6.7 1 23 595 617 595 617 0.97

10 18 1.7e-05 0.0017 19.0 5.8 1 23 623 645 623 645 0.98

11 18 3.6e-07 3.5e-05 24.3 2.8 1 23 651 673 651 673 0.98

12 18 6.9e-06 0.00067 20.2 7.8 1 23 679 701 679 701 0.98

13 18 2.2e-05 0.0021 18.7 9.1 1 23 707 729 707 729 0.98

14 18 2.8e-05 0.0028 18.3 7.5 1 23 735 757 735 757 0.98

15 18 0.0014 0.13 13.0 8.8 1 21 763 783 763 785 0.94

16 18 1e-05 0.001 19.7 0.4 1 23 791 813 791 813 0.98

17 18 0.025 2.4 9.1 4.5 1 23 823 845 823 845 0.98

18 18 4e-07 3.9e-05 24.1 1.3 1 23 851 873 851 873 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.6e-05	0.0045	17.7	1.4	1	23	371	393	371	393	0.96
2	18	8e-06	0.00078	20.0	1.9	1	20	399	418	399	421	0.94
3	18	1.1e-05	0.0011	19.6	1.4	1	23	427	449	427	449	0.98
4	18	6.6e-05	0.0065	17.2	4.4	1	21	455	475	455	477	0.95
5	18	9e-06	0.00087	19.9	5.6	1	23	483	505	483	505	0.99
6	18	2.1e-05	0.002	18.8	5.3	1	23	511	533	511	533	0.97
7	18	7.8e-05	0.0075	16.9	6.9	1	23	539	561	539	561	0.96
8	18	7.6e-08	7.4e-06	26.4	2.7	1	23	567	589	567	589	0.98
9	18	5.6e-05	0.0055	17.4	6.7	1	23	595	617	595	617	0.97
10	18	1.7e-05	0.0017	19.0	5.8	1	23	623	645	623	645	0.98
11	18	3.6e-07	3.5e-05	24.3	2.8	1	23	651	673	651	673	0.98
12	18	6.9e-06	0.00067	20.2	7.8	1	23	679	701	679	701	0.98
13	18	2.2e-05	0.0021	18.7	9.1	1	23	707	729	707	729	0.98
14	18	2.8e-05	0.0028	18.3	7.5	1	23	735	757	735	757	0.98
15	18	0.0014	0.13	13.0	8.8	1	21	763	783	763	785	0.94
16	18	1e-05	0.001	19.7	0.4	1	23	791	813	791	813	0.98
17	18	0.025	2.4	9.1	4.5	1	23	823	845	823	845	0.98
18	18	4e-07	3.9e-05	24.1	1.3	1	23	851	873	851	873	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAACAGCATGCATTGCCAGCGACCACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTTCGACCGCGAGTCTTGGCAATGTAGGGAGTATTCCCCATTCATCCGCGGACCTGCGTGTAGGTACTGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTGTTTCCCGGACCGCTACCTCAGGTCTCGGTCTACCACTCCTCGCATAGGAGTGGTGGAGGTGGGGAGGCATCTTCCTCCAAAGAGCCAGCCTCTTCACTCAACCAGGAAATGGCGTTGACTTCCAGCTCGCATCATCAGCAACAATCAACAGCCGCGCATCATCATCATCAGCCTTCAGTTAGCAGCAGCAGCCACCACAGTTCTCTGCAGTCAAATTCACAGACGGCACAACGAGACGACAACAAAGTCAAGGACGAGGGCGGTAGTTGCACCACTGAGCGTTGTAGCGACAATCAGGTTCACTGTCAAGTTCAATGCGATCTACAGTTACAACCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTCCACTACCGAAGGAGGAAGTCAAAACAATTCCGAAAAGCCTGAGAAAGAGAAGGAATTGCGACAGCTGAATATGACCCAATTTCAAGTTCCTGATTTGAAACCAGGAGGACATATGATGGATGTGAGAACGGCGGACGGATCGGTAGTGAAAATCAGCGCGGGGAACGAGCAAGATTTGGCGAAGACTCTTGGTGTGGAAATGGTACAAAATATGTACAAGGTGAATGTCGAAGACATTAATCAACTCTTGGCGTATCACGAGGTCTTCGGAAAGTTGCAAAGTGAAATTGCGGCCGGTACGACTTTGGTTGGCAGCACTGTACCTACGCAAACAGTCACCACGATACAGAACGGCACGCCGATCGTGCAGCAAGTTCAACTGAACAAATTTGACATAAAATCGAGCGACGGGGAGGCAACGCCTGGCCCAAGCGCATCACCCGTGTCGGTTGGTAGTCACGCTTGCGAAATATGCGGGAAGATCTTCCAATTTCGTTATCAACTCATTGTGCATCGCAGATATCATACCGAACGCAAACCGTTCACGTGTCAGGTGTGCGGTAAAGCGTTCTCGAATTCGGGCGATCTTACACGTCACGGCAAGTGTCACCTGGGTGGATCTATGTTCACCTGCACAGTTTGTTTCCATGTTTTCGCAAACGCGCCGTCACTGGAACGTCACATGAAGAGACACTCCACTGACAAGCCGTACAACTGCACAGTTTGCGGTAAAAGCTTCGCGCGTAAGGAACATTTGGATAATCACACAAGATGCCACACCGGCGAGACTCCGTATAGATGCCAATACTGTTCCAAGACATTCACTCGAAAAGAACACATGGTAAATCATGTTCGCAAACACACTGGCGAGACTCCGCATCGATGTGATATTTGCAAGAAGAGCTTCACTCGGAAAGAACACTTTATGAATCATGTGATGTGGCATACGGGAGAAACTCCGCATCATTGTCAAGCATGTGGCAAAAAGTATACTCGCAAAGAACATCTCGCTAATCATATGCGTTCGCACACGAACGACACGCCGTTCCGTTGTGAAATATGCGGTAAGTCATTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGCGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACGCGAAAGGAGCATCTTCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAAACACCCTTCCGCTGTTCGTATTGTCCAAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGTCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAGAGGACGTTCACTAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCCTCGCACTGTTGCAACGTGTGCTCTAAGCCGTTCACAAGGAAGGAACATCTTGTGAATCATATGCGTTGCCATACCGGTGAACGTCCGTTTGTGTGCACAGAATGTGGCAAGAGTTTCCCACTGAAGGGCAATCTGCTCTTCCATATGCGCTCACACAATAAGGGCAGTAACGCTGAAAGGCCGTTCCGCTGTGACCTGTGCCCCAAAGATTTCATGTGTAAAGGACACTTAGTCTCGCATCGGCGTTCGCACTCGGACGAGCGGCCGCATAGTTGCCCGGATTGCGGCAAGACCTTCGTCGAGAAAGGCAACATGTTGCGGCACTTGCGCAAGCATGCGACCGAAGGACCGCCGACGCAAGTTAGTACACCGTCGGCCATACCGCAGTCGAGTGTTCTACCGATACCGGCGGCAGCGGCAGTCCTGGTCGGACATCCATTAGCGCCTCCAGCACCTACCGTTGTGCCGCAACACACAGTGGTCGTGCCGACACCGCCCGGTGTACTGACGTCGTATTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATSTASLGNVGSIPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHSSHRSGGGGEASSSKEPASSLNQEMALTSSSHHQQQSTAAHHHHQPSVSSSSHHSSLQSNSQTAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSTTEGGSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNSGDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHSTDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHATEGPPTQVSTPSAIPQSSVLPIPAAAAVLVGHPLAPPAPTVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_01269956; iTF_01267719; iTF_01267006;
80% Identity: -