Pcub009059.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex cubaensis
Gene Symbol
-
Assembly
GCA_014825685.1
Location
QVOA01002508.1:132538-142748[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 4.1e-05 0.0045 17.8 1.4 1 23 304 326 304 326 0.96
2 18 7.2e-06 0.00078 20.2 1.9 1 20 332 351 332 354 0.94
3 18 1e-05 0.0011 19.7 1.4 1 23 360 382 360 382 0.98
4 18 5.9e-05 0.0065 17.3 4.4 1 21 388 408 388 410 0.95
5 18 8e-06 0.00087 20.0 5.6 1 23 416 438 416 438 0.99
6 18 1.8e-05 0.002 18.9 5.3 1 23 444 466 444 466 0.97
7 18 6.9e-05 0.0076 17.1 6.9 1 23 472 494 472 494 0.96
8 18 6.8e-08 7.4e-06 26.5 2.7 1 23 500 522 500 522 0.98
9 18 5e-05 0.0055 17.5 6.7 1 23 528 550 528 550 0.97
10 18 1.6e-05 0.0017 19.1 5.8 1 23 556 578 556 578 0.98
11 18 3.2e-07 3.5e-05 24.4 2.8 1 23 584 606 584 606 0.98
12 18 6.2e-06 0.00067 20.4 7.8 1 23 612 634 612 634 0.98
13 18 1.9e-05 0.0021 18.8 9.1 1 23 640 662 640 662 0.98
14 18 2.5e-05 0.0028 18.4 7.5 1 23 668 690 668 690 0.98
15 18 0.0012 0.13 13.1 8.8 1 21 696 716 696 718 0.94
16 18 9.3e-06 0.001 19.8 0.4 1 23 724 746 724 746 0.98
17 18 0.022 2.4 9.2 4.5 1 23 756 778 756 778 0.98
18 18 3.6e-07 3.9e-05 24.2 1.3 1 23 784 806 784 806 0.97

Sequence Information

Coding Sequence
ATGAATAGTGAACAGCATGCATTGCCAGCGACCACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTTCGACCGCGAGTCTTGGCAATGTAGGGAGTATTCCCCATTCATCCGCGGACCTGCGTGTAGGTACTGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTGTTTCCCGGACCGCTACCTCAGGTCTCGGTCTACCACTCCTCGCATAGGAGTGGTGGAGGTGGGGAAGCATCTTCCTCCAAAGAGCCAGCCTCTTCACTCAACCAGGAAATGGCGTTGACTTCCAGCTCGCATCATCAGCAACAATCAACAGCCGCGCATCATCATCATCAGCCTTCAGTTAGCAGCAGCAGCCACCACAGTTCTCTGCAGTCAAATCCACAGATTCCCGTATCTCTTCCCGGGGGAAGTCAAAACAATTCCGAAAAGCCTGAGAAAGAGAAGGAATTGCGACAGCTGAATATGACCCAATTTCAAGTTCCTGATTTGAAACCAGGAGGACATATGATGGATGTGAGAACGGCGGACGGATCGGTAGTGAAGATCAGTGCGGGGAACGAGCAAGATTTGGCGAAGACTCTTGGTGTGGAAATGGTACAAAATATGTACAAGGTGAATGTCGAAGACATTAATCAACTCTTGGCGTATCACGAGGTCTTCGGAAAGTTGCAAAGTGAAATAGCGGCCGGTACGACTTTGGTTGGCAGCACTGTTCCTACGCAAACAGTCACCACGATACAGAACGGCACGCCGATCGTGCAGCAAGTTCAACTGAACAAATTTGACATAAAATCGAGCGACGGGGAGGCAACGCCTGGCCCAAGCGCATCACCCGTCTCGGTTGGTAGTCACGCTTGCGAAATATGCGGGAAGATCTTCCAATTTCGTTATCAACTCATTGTGCATCGCAGATATCATACCGAACGCAAACCGTTCACGTGTCAGGTGTGTGGTAAAGCGTTCTCGAATTCGGGCGATCTGACGCGTCACGGCAAGTGTCATCTGGGTGGATCTATGTTCACCTGCACAGTTTGTTTCCATGTTTTCGCAAACGCGCCGTCACTGGAACGTCACATGAAGAGACACTCCACTGACAAACCGTACAACTGCACAGTTTGCGGTAAAAGTTTTGCGCGCAAGGAACATTTGGATAATCACACAAGATGCCACACCGGCGAGACACCGTATAGATGCCAATACTGTTCTAAGACATTCACTCGAAAAGAACACATGGTAAATCATGTTCGCAAACACACTGGCGAGACCCCGCATCGATGTGATATTTGCAAGAAGAGCTTCACTCGCAAAGAACACTTTATGAATCACGTAATGTGGCACACAGGAGAAACTCCGCATCATTGTCAAGCGTGTGGCAAAAAATATACTCGCAAAGAACATCTCGCTAATCATATGCGTTCGCACACGAACGACACGCCGTTCCGTTGTGAAATATGCGGTAAGTCATTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGCGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACGCGAAAGGAGCATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAAACACCCTTCCGCTGTTCGTATTGTCCAAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGTCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAGAGGACGTTCACTAGGAAAGAACACCTAAATAATCATCTCCGTCAACATACCGGAGATTCCTCGCACTGTTGCAACGTGTGCTCCAAGCCGTTCACAAGGAAGGAACATCTTGTGAATCATATGCGTTGCCATACCGGTGAACGTCCGTTTGTGTGCACAGAATGTGGCAAGAGTTTCCCACTGAAGGGCAATCTGCTCTTCCATATGCGCTCACACAATAAGGGCAGTAACGCTGAAAGGCCGTTCCGCTGTGACCTGTGCCCCAAAGATTTCATGTGTAAAGGACACTTAGTCTCGCATCGGCGTTCGCACTCGGACGAGCGACCGCATAGTTGCCCGGATTGCGGCAAGACCTTCGTCGAAAAAGGCAACATGCTGCGGCATTTGCGCAAGCACGCGACCGAAGGACCGCCGACGCAAGTTAGTACACCGTCGGCCATACCGCAGTCGAGTGTTCTACCGATACCGGCGGCAGCGGCAGTCCTGGTCGGACATCCATTAGCGCCTCCAGCACCTACCGTTGTGCCGCAACACACAGTGGTCGTGCCGACACCGCCCGGTGTACTGGCGTCGTATTAA
Protein Sequence
MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATSTASLGNVGSIPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHSSHRSGGGGEASSSKEPASSLNQEMALTSSSHHQQQSTAAHHHHQPSVSSSSHHSSLQSNPQIPVSLPGGSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNSGDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHSTDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHATEGPPTQVSTPSAIPQSSVLPIPAAAAVLVGHPLAPPAPTVVPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00899003;
90% Identity
iTF_01271383;
80% Identity
-