Ppal015548.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- -
- Assembly
- GCA_014825455.1
- Location
- QVNV01017960.1:177-2898[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.1 4.4e+02 0.9 0.0 14 27 17 29 12 50 0.83 2 2 1.9e-10 8.5e-07 28.8 1.2 14 73 222 277 220 281 0.91
Sequence Information
- Coding Sequence
- ATGATATCGTTCACCAGTTTTCCCAAATTAAATTCAAACAATTACAACTCATGGAAAGTGGACATGAAAAGAAGAAAGAACAAAGCATATATTACAACTTACCAAGGTATTGAAAGACAATTTCAAACGTTAATTGCTAACACACTAGATGGGAAAGAAACTTGGGACATTTTGAAAAAAAATTTTGAGCCGACATCACGTGCCCGTCTGGCAGTACTTGTAGATGAATTCTACGACTTAAGGTTAGAGGATAAATATTTCACTTTTGAGAATATTGAGAGACAATTAATCACAGAAGAAGCGAAAATTAAACAGAAGAGAAAAGATGAAGGATTAGACGGTGTAATAGATGCATACCAGACAGAAGCCAGCAAAGAAATGAAGAACTCCAAAAAGGAAAAAACCGTACACGTGAAAATTGAAGAGAGTAAAAATGGAGTGGCAACATTGTTCGGAAGAGAAAGATTCAACAGGAACTATAACGTTATCACGGACAGCAGGGAACTACTATGGAGCGATGACGAGATAGAGGAAGAAACAAGAAAGACTGGTACTCAAGAGATTCAGAAAAAAGAGATAGAGAAAGAAACAAGAAGGACTGGTACTCAAGAGATTCAGAAAAAAGAAAAGCCGAACGGAAATGAAAAACAGATGAATATTTCGGAGTGGAAAAGAGTAGAAAGACCAAGAAAGAAAGAGGAAAGAATTGACGTATATTACTATCCACCTGAGGACAACATCAGACTGAGGTCATTAAGTGACATGAAGAAATATTGTGAAAGAAATGGCTTACGGTATGATCCAAAACATTTCTCATTCAAATCAGAAAAACAAGCTTACCGCGAAGAGGATACGGAAGAAGAAGACCATTTGTCCAATTATAACACTCAAGACGAGGTGTTGGACGATATATTTTAA
- Protein Sequence
- MISFTSFPKLNSNNYNSWKVDMKRRKNKAYITTYQGIERQFQTLIANTLDGKETWDILKKNFEPTSRARLAVLVDEFYDLRLEDKYFTFENIERQLITEEAKIKQKRKDEGLDGVIDAYQTEASKEMKNSKKEKTVHVKIEESKNGVATLFGRERFNRNYNVITDSRELLWSDDEIEEETRKTGTQEIQKKEIEKETRRTGTQEIQKKEKPNGNEKQMNISEWKRVERPRKKEERIDVYYYPPEDNIRLRSLSDMKKYCERNGLRYDPKHFSFKSEKQAYREEDTEEEDHLSNYNTQDEVLDDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -