Pgra004810.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex gracilis
Gene Symbol
-
Assembly
GCA_002006095.1
Location
NW:355446-359294[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.2e-05 0.00071 19.2 4.4 2 23 357 378 356 378 0.97
2 15 4e-05 0.0024 17.6 0.3 2 23 384 405 383 405 0.96
3 15 2.6e-05 0.0015 18.2 0.9 2 23 492 513 491 513 0.97
4 15 1.6e-05 0.00097 18.8 4.7 1 23 519 541 519 542 0.96
5 15 2.8e-05 0.0016 18.1 0.2 1 23 547 569 547 569 0.98
6 15 5.6e-07 3.3e-05 23.4 0.5 1 23 586 608 586 608 0.98
7 15 1e-06 5.9e-05 22.6 1.2 1 23 614 636 614 636 0.97
8 15 7.4e-06 0.00044 19.9 2.4 1 23 642 664 642 664 0.98
9 15 0.001 0.062 13.1 0.2 1 23 670 692 670 692 0.99
10 15 6.8e-05 0.004 16.8 0.2 3 23 700 721 699 721 0.96
11 15 1.5e-05 0.00088 18.9 1.3 1 23 727 749 727 749 0.98
12 15 0.00032 0.019 14.7 4.7 1 23 755 777 755 777 0.98
13 15 4.1e-06 0.00024 20.7 0.4 1 23 783 806 783 806 0.97
14 15 1.4e-06 8.5e-05 22.1 0.6 1 23 812 834 812 834 0.97
15 15 3.6e-06 0.00021 20.9 5.0 1 23 840 862 840 862 0.99

Sequence Information

Coding Sequence
atgaacAAAGATATGCCATTAAGTATAGAATGGATTCCAAAAGATGCGTATACGCACAATTCTCTGGATCATTTTCTGCCGGGAGATCAAAACGGACGCAATGTTGTGTTTATAAAACAAGAATCTGAATTCTTGGAAAAAGCGTTAAACACACAAACTTTGAAAAACATGCTTGTTACCATGCAAGTCCCTGAATCTACGGACGAAGATGAGATGAAACGACAAAATTGTCAGGAAACATCAGCaactCAATGTCAAACAGAATCTCCCAAAAGGATGCCGGAACAATTAACCGAGACTTCTAAGAAATCATACAACAAAGCTCGCATTGACGTAATAGAGGTCTCGACAGAATCTACATCTGAATATCGGTATTTTTTCACTTACGAAGATCAATCCTCTAAATTCACAGTGCTAAGAGCTCTTTGCGGCAACACTGCCAAAGAAGTTGCGGCAAAATTGTTAGATGTGTTGGCGATCATAGGGGCACCAAGAGTGTTAAGAAGTGGCAACGGACGTAAGTTTGCCGAACAAGTTGTGCGCGAACTGCGTTCACTGTGCAAGAATTTCTTCATATTGCACGGAGACTTGCCTAAATCCGAAGTTAGCTGCAGGGATTTTAAGAGCTTGCTCGAATCCTGGATGAGGGAGAATTCGACCAGAATCTGGTGGGAGGGTTTGAATTTCGTACAGATGCTTCACAATACGACGTATCACTGTCAGAATGGCAAAGTTCCGTGTGACATGTTGTTCGGACGAAATGTACGCGAGAAGTTTCAAAATACCTGGGCGGAAAAGGATACGGAGAATGTGTGGACGGAAGAAAACTGGATCGAGAGTTCGTCGATCACCGATTCCTTATCGGTGATTCGTGAGGAAAATGAAAACGTGCAAGAAACACAAAGTCAGAATGCGTATTCGAAAGACAACGACGACGTGAACGGTTTTAGTTTCGTCGATGTAAAAAGCGAAGCTCTCGTGGGCAGTAAACGCGGAACGGATTCACAAGATACGAATGAAACAGACGCGAGAATCGAATCGAAAGATAACGAAAACGCTCGATCTCTCAAGTGCAAATATTGTCAGAAACAGTACGCGAGACTCGGACATTACAAGAATCACATGAGAACTCACAGAGCAGAACAACTGCAATGTAAGCTGTGCGGCAAAAGTTTTAGAGTTGCGAGATTGTACGAGAAGCACGTTGCGTCACACGAACAGAACAAATTAGCTAACAAGGAAGAAGTGAATGAAAATATCAAAAGCAACGGCGACGCGTTAACGGCTGTGCttaagaaagaaaactgtCAAGTTAAAACACACGAAATATCCAAGATAGCGAATGAAGATCGTGACACGTCGTTGGTCGCGAAAGATTCCTGTGATAAGATCGTCGAGAACTCGAGTCAAACCGCAAGACGAAAGTTGTCCACGGAAAGCGGCGTTCGCGTGTCAAAAGCGCAATCGCCTCTGGAGTGTACATACTGCAAGCAGAAGTTCAGCTTTCCGAGCGTGCTGGTAAGGCACTTGCGGTCGCACACGAATGAGCGACCGTACGTATGCAAGGTGTGCAACAAGAGCTTCAAGCAGCTGGGACATCTGAGTCAACACTCTCTGACGCATCACGATTATCGCTCGTTCCAGTGCGCGGTTTGCGGTGTGAAGTTCGATTCGCTGGACTCTCTGAAGAAACACGCTAACTCGCACGAGGGCGATGGCGCAATGACAACGCCCAGAATTCGCGAATATCGCGTGTTCGAGTGCGACACCTGCAAGAAGGTGTTCGCGACTAAGAGCGTCTTGGAGCGGCACATACTCACGCACACGCAGGAACGCCAGTACGATTGTAAAGTATGCGGCAAACGCTTCAAACAGGCCGGCCACGTGAAATCGCACATGCTGATACACACCGGCGAGCGTCGCTTCCAGTGCACCGTTTGCTCGAAACGCTTCAGCCTGTCCAACTCGCTGAAGAAGCACATGTACGTGCACAATGGCGAGAAGCCGTATCAGTGCGACGTGTGCGGCGCGCGGTTTCTGGAGAAGCGCAATCTCAACGGCCATCTGCTTACGCACACCAATGAGCGTCCGCACGGTTGCAAGATATGCGGCAAACGTTACACCCTGGCCGATACTCTGCGACGTCACGTGAGCGTCGCGCACAAGGACGGTCGCACTTATCAGTGCGAGATCTGCGCAAAGATGTTTAAGCAGCTCGCCCATCTGTCGGTGCACAAAAAGGTCCACAACGACGAGCGACCGTTTCAATGTCACTTGTGCGAGAAGAATTTCAAGCACAAAAACGTGCTCAAGTCGCATCTTGCGATTCACGCAAACGTACGGCCGTTCGAGTGTGATGTGTGCAAAGCCACCTTCGTGAGGAAGACGAACTTGCAGACGCACATCTCGTCCGCACACATGAACGAGCGTCCGTATGTGTGCACTATCTGTGGCAAACGTTTCAAACAGATCAGCCATTTAAACGGCCACGTGATTGTGCACAGCAATCTGATGCCCTACAAATGTGACTTCTGCGATCGTCGATGCAATCGACTCGACAATCTGAAGAAGCACATGCGTCTTCATACGAAGAACAAAGAGTGA
Protein Sequence
MNKDMPLSIEWIPKDAYTHNSLDHFLPGDQNGRNVVFIKQESEFLEKALNTQTLKNMLVTMQVPESTDEDEMKRQNCQETSATQCQTESPKRMPEQLTETSKKSYNKARIDVIEVSTESTSEYRYFFTYEDQSSKFTVLRALCGNTAKEVAAKLLDVLAIIGAPRVLRSGNGRKFAEQVVRELRSLCKNFFILHGDLPKSEVSCRDFKSLLESWMRENSTRIWWEGLNFVQMLHNTTYHCQNGKVPCDMLFGRNVREKFQNTWAEKDTENVWTEENWIESSSITDSLSVIREENENVQETQSQNAYSKDNDDVNGFSFVDVKSEALVGSKRGTDSQDTNETDARIESKDNENARSLKCKYCQKQYARLGHYKNHMRTHRAEQLQCKLCGKSFRVARLYEKHVASHEQNKLANKEEVNENIKSNGDALTAVLKKENCQVKTHEISKIANEDRDTSLVAKDSCDKIVENSSQTARRKLSTESGVRVSKAQSPLECTYCKQKFSFPSVLVRHLRSHTNERPYVCKVCNKSFKQLGHLSQHSLTHHDYRSFQCAVCGVKFDSLDSLKKHANSHEGDGAMTTPRIREYRVFECDTCKKVFATKSVLERHILTHTQERQYDCKVCGKRFKQAGHVKSHMLIHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPHGCKICGKRYTLADTLRRHVSVAHKDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYVCTICGKRFKQISHLNGHVIVHSNLMPYKCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267008;
90% Identity
iTF_01267720;
80% Identity
-