Pgra004531.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex gracilis
Gene Symbol
Hr39
Assembly
GCA_002006095.1
Location
NW:415054-426093[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 4 1.1e+04 -6.2 5.9 147 166 48 68 23 108 0.48
2 5 1.6 4.4e+03 -4.0 9.6 76 172 287 405 229 412 0.59
3 5 4 1.1e+04 -7.1 10.3 74 148 417 500 399 538 0.42
4 5 6.4e-08 0.00017 20.4 0.0 1 22 605 626 605 646 0.90
5 5 6.5e-71 1.8e-67 227.9 0.0 86 408 660 998 635 998 0.80

Sequence Information

Coding Sequence
ATGTCGGATCAGAACGGGCCCAATGAGGGCCCCCCAGGACCAGGACCCGGCTCGGATTCGGGCTGGTGGCAAAGCACGCAGACCTGGAAATCGTCGGCGACCGCCACGTCGTCGACCTCGTCGATCTCCACTTCAATAGCGGGTTCCGCCTGCGTCTCCGTCTCCTGCGTCGCGTCCAGCTCATCTACGACGAGCTCGTCCACGTCGACCAACTCGTCCGCGACCTGTTGCCTCTCGTCGTGCATCGGTGTTTCCTGCACGATGAGCCCGAGCCGCTCGACGGAATCGGGCAAGAACGTATCCGTCACTACTATTAACGTGCCCAATCAAGAGATGCACGATGgTAAAGGGATGTGTAAATATCTTGGACGACAGAATGGCGTAACAGTGTCAGTGGTGTCGACTTCCTCCCTGCTGGCTTCCCCCCTGGGAGGCGCGAACGCAGTGCCGACGGGCGGAATCTGTACAAATACGGGAGCAGCGCATAATATCGGAATCAGCGGTATCCTTGCCGCGAACGCGGCTGACGTCGACGACGCGGAGGACAGCGACGGCGAGATCAGCAAGATTGACTTCCGAGGTGTTAATCTGCGCTCGAAGAAGAAACGCGATGTATCGAACAGCCAGAATGGCGACAAGATCGGTGACGGGGACGCGAATGGCGACGGCGGCGCGTGCTGCGACGATAATTCGCAGCATCAGCCCGAGAGACCTATGTCGTGGGAGGGAGAACTGTCGGATCAAGAAATGTCTTCCAATACAATTACCAATCAGGATCAAAACGAGGAAACGTCTATGGAGGGGGTTCAGGTATGCAGCGCGAGTCCTGGACCTATGGAGCAGAAGTTTCCAATTAAATCAGAGCCGGATTTTCGATCCAGCTCGGGTTTCACGATAGGATCGTTTCACGATACCGGCCTGCCCATGACACACAATCAACAGctgcagcaacagcagcagcagcaacgcGGTATCGAAAATCTTGAACAGACTCAACAGAGCGACCTGCCGCTTCTCGGCGGATACAACAATTCAACGCCCAATCACAGTCCTGTTCTCAATCCGCGACATCATTTAACTAAGCACAGTCATACTAGATCCCAGgTACCGTCGCCAGACTCCGCTATTCATTCCGCATACAGCGTCTTTAGTTCGCCAACGCAGAGTCCTCACGCGGCGCGACACTCAGCCCTAGGAGCGGGCAGTCCGATACTTTCCTCGTCGTTATCCTTGTCCCGGCATAGCTTCAATAACTCAACCTCCTCCCTGTCGCTATCGTTGTCGCATTCACTTTCGAGAAACAACTCCGACGCTTCCAGCAGCTGCTACAGCTACGGCTCACTCAGTCCGCCCACGCATTCACCCGTTCAACAGCCAAGACATCCGCATTCGCATTCGCAGCATCACCAGCATCAGGTGACACAAAGTAGTCCGCTGCATCTGCCAGCTTCGTCCGCCGTTGCCGCGCATCATTATTCATCTTCTTCCGTGCCAGGCTCGGAACTGTCTCCGGACGGTCATCCCGTCACGGAGGATCAGGAAGACTGCAGAATACCCTCGGCATCGTCAGGTATTTCTACTAGGCAGCAATTAATCAACAGTCCCTGTCCGATTTGTGGCGACAAAATAAGCGGCTTCCATTATGGAATCTTCTCGTGCGAGTCATGTAAAGGATTTTTCAAGCGCACCGTCCAGAATCGTAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCTGGTCACCGTAGCTACAAGAAAGAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATCAGAGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAGTGTACGTACACTTTACCGGCGAATCTTGTTGGTTCTGCTGGTGGTATGGCTAACGAAAAGCTGACGGTAGCGGGTAACTGCAGCCCGGCGCCAACCGGAAGCGAACACCATTACTCCGCTAGATATCACTCGAATCATTCGCACAAGATGCAAGTGGTGCCTCAACTCTTGCAAGATATCATGGATGTGGAACATCTCTGGCATTACAACGACAACGAACGAATAAGCGGCAGTCGCGGATTACCCGGGAATACGAGGAACACCGTTACTGGTCATGAAAACATGTCACTCGGCGGATCTGGCAGTGCTTCGGCGTCCAGCGGTATCGAGACTGGGGGTATTGGGGCCGGAAATAACGGAAGCGGGGTGAAATGTTCGTCAAATGATTCCATCAACGCCGATAGCAACAACATACAGGGAGAATCGGTTAGCCCCGTCGTCTCGTCTTCCACAGGGGCCGATCAACGTTCCACAAATGGCAAtactaacaataataatggcaattctCAAGGTGCCAGTAATTCCAACGGCAATCCAACGCAACATCCGGATTTTCTGTCTAATCTGTGCAACATTGCGGATCATCGACTGTACAAAATTGTTAAATGGTGCAAGAGTTTGCCCTTATTTAAGAATATCTCGATCGATGATCAAACCTGCTTGTTAATCAACTCCTGGTGCGAGCTATTACTTTTCTCATGTTGCTTTCGCAGCATGAGCACTCCCGGTGAAATAAGAGTGTCTCTTGGCAAGTCGATTACTCTGGAACAAGCGAAGCAGCTTGGTTTGGCGACTTGCATCGAGAGGATGCTCGCTTTTACCAATAATCTGCGAAGGCTGCGAGTAGACCAGTATGAATATGTTGCGATGAAGgtGATCGTGCTGCTAACGTCCGATACGAGCGAACTAAAGGAGCCGGAAAAAGTCAGAGCTTCTCAAGAGAAAGCCCTTCAAGCGCTGCAGCAATACACAATCGCAAGGTATCCGGAGATGCCTGCCAAATTCGGTGAACTATTATTAAGAATTCCAGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCGAAACGCGCCGAGGGAGAAGGCAGCTCGTTCAACCTTTTAATGGAATTGTTAAGAGGAGATCACTGA
Protein Sequence
MSDQNGPNEGPPGPGPGSDSGWWQSTQTWKSSATATSSTSSISTSIAGSACVSVSCVASSSSTTSSSTSTNSSATCCLSSCIGVSCTMSPSRSTESGKNVSVTTINVPNQEMHDGKGMCKYLGRQNGVTVSVVSTSSLLASPLGGANAVPTGGICTNTGAAHNIGISGILAANAADVDDAEDSDGEISKIDFRGVNLRSKKKRDVSNSQNGDKIGDGDANGDGGACCDDNSQHQPERPMSWEGELSDQEMSSNTITNQDQNEETSMEGVQVCSASPGPMEQKFPIKSEPDFRSSSGFTIGSFHDTGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPILSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVTQSSPLHLPASSAVAAHHYSSSSVPGSELSPDGHPVTEDQEDCRIPSASSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCLVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSAGGMANEKLTVAGNCSPAPTGSEHHYSARYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNERISGSRGLPGNTRNTVTGHENMSLGGSGSASASSGIETGGIGAGNNGSGVKCSSNDSINADSNNIQGESVSPVVSSSTGADQRSTNGNTNNNNGNSQGASNSNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQTCLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQAKQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_01267641;
80% Identity
iTF_01270535;