Basic Information

Insect: Pseudomyrmex gracilis
Gene Symbol: bab2
Assembly: GCA_002006095.1
Location: NW:248221-279764[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.3e-12 2.2e-09 36.2 0.0 1 39 426 465 426 469 0.90

2 4 5e-12 2.6e-09 35.9 0.1 2 39 481 518 480 521 0.94

3 4 1.1e-18 5.9e-16 57.2 0.0 1 45 535 580 535 580 0.97

4 4 2.1e-18 1.1e-15 56.4 0.1 1 42 587 629 587 630 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.3e-12	2.2e-09	36.2	0.0	1	39	426	465	426	469	0.90
2	4	5e-12	2.6e-09	35.9	0.1	2	39	481	518	480	521	0.94
3	4	1.1e-18	5.9e-16	57.2	0.0	1	45	535	580	535	580	0.97
4	4	2.1e-18	1.1e-15	56.4	0.1	1	42	587	629	587	630	0.97

Sequence Information

Coding Sequence: ATGGATATagcgagggagagaaaaagttggaggagaagagaaagagatagagctTCCAGGACGGAGATACAgagaagaacgagagaaaaggGGAGGTTGTCTTTCTCCCTGTCGTTAGGTGGCGGCATGGCCGGGCAGCATTACTGCCTGCGCTGGAACAACTACCAGTCAAACATGACGTCGGTGTTCCACCAGCTCCTGCAGAATGAGGCCTTCGTCGATGTCACCCTAGCATGCAACGAGGCCTCCTTGAAAGCGCATAAGGTGGTGCTGTCGGCCTGCAGTTCTTACTTTCAAAATTTGCTGCTGTCAAATCCTTGTAAACATCCGACAATTATCATGCCGCAGGACGTGTGCTTCAACGACCTCAAGTTCATCATCGAGTTCGTCTACCGCGGCGAGATCGACGTCTCGCAAGCGGAGCTTCAGTCGCTGTTAAAGACGGCCGATCAGCTGAAGATCAAGGGCTTGTGCGAGGTGCCGGAAAACAGAGACGGTCCGCAACCTGTCACAAGTCTGAGCTCGCCACCGAGAGAATCCGGCACCCCGAGATTGAATTACACGAAGCTGAAGAagcatcatcatcatcagcGGTACAAGAGACCTAGAATCGAGCGGTCGACGTTTGAGCCGCGTGCCACCGATCCGAGACACTACGAACGTTACAAAGAGGAGGAGGGCAACAACGATTACAGCCGCGATAACAAAGAGAACCATCGGGACTGGCAAGCCGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCACTGGAAAATTGCCAACGTAGTAGTAACAGTagcaacaacaataacaataacaacgGTAACGGCGCGAATAACAACGGTGACATGTTCTGTCACACAGGGCTAGGTCACTACGGCCATCATCCGGATCCCGGAGAAGTCGATTTACCCCCCGAGACTCAACCTACCCCTCCTAGCGCCACCTTAGTAGGCACCACCATCACCCACCTGAGAGATCCGGATCATCATTCTACAGAGATTCAAAACTGCGACAACGTCAAGATCAAGTTCGAAACGTTACACACAATGGATTCTTCGGACACGATCGATATAGACAGCCACATGTCAGACCGAGCGAGTGTGAGCTCGAAAAACGCAGCTGACAGTGACAACATGATGATGATAACACCGGAATTACTCGGACTTATGCCGTCGGGAAGCTCTGGTCAATCGGACTCCGGTGAGAACAACTCGAGGGGACACAGTGGGCAGTCCAGCTCGCATCACCATGGCTCGAAATCGTGGACACAAGAAGATATGGACGCGGCATTGGACGCGTTAAGAAATCACGACATGAGTCTGACGAAAGCGTCAGCAACCTTTGGTATTCCTTCGACAACTTTATGGCAACGAGCACATCGGTTAGGAATCGATACACCGAAGAAAGATGGTCCAACAAAATCTTGGAGTGACGAGAGCTTGAACAATGCTTTAGAAGCGTTACGCACTGGCACGATCTCGGCCAATAAAGCGTCAAAGGCGTTTGGTATACCTTCTAGTACGTTGTACAAAATTGCCAGGAGAGAAGGCATCAGGCTGGCAGCACCGTTCAATGCAAGTCCTACCACGTGGACACCTGCCGACCTCGATCGTGCTTTAGAAGCTATTAGATCCGGCCAGACGTCCGTACAAAGAGCGTCAACGGAATTTGGTATTCCCACAGGTACGCTATACGGAAGGTGCAAACGAGAAGGAATTGAGCTTAGCAGAAGCAATCCTACACCGTGGAGTGAAGATGCTATGACCGAAGCTCTCGAGGCCGTCAGATTAGGACACATGAGCATCAATCAAGCAGCAATCCACTACAATCTACCGTATTCGTCGCTATACGGACGTTTCAAGAGGGGCAAATACGAAGAGCCGGTCGTCAGTGAAATCTCACAGGATGGCAGCAGTCCGCATTTTCACCAGAGTCCCAGTCAGAATCACTCGTCCGCCCTTCCGGATCAAATGCCTTATCCGGGCAGCTGA
Protein Sequence: MDIARERKSWRRRERDRASRTEIQRRTREKGRLSFSLSLGGGMAGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNEASLKAHKVVLSACSSYFQNLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPQPVTSLSSPPRESGTPRLNYTKLKKHHHHQRYKRPRIERSTFEPRATDPRHYERYKEEEGNNDYSRDNKENHRDWQAEDEECTETATAAVALENCQRSSNSSNNNNNNNGNGANNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDNVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEISQDGSSPHFHQSPSQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01520386;
80% Identity: iTF_01270620;