Pfla022960.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex flavicornis
Gene Symbol
-
Assembly
GCA_014825475.1
Location
QVNW01000286.1:26515-29671[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0056 0.6 11.1 0.1 1 20 29 48 29 49 0.95
2 20 8.1e-05 0.0086 16.9 1.7 1 19 67 85 67 85 0.99
3 20 0.00032 0.034 15.0 4.5 2 23 156 177 155 177 0.94
4 20 0.00022 0.023 15.5 0.6 1 23 181 203 181 203 0.98
5 20 0.00012 0.013 16.3 0.5 3 23 211 231 210 231 0.97
6 20 9.3e-07 9.9e-05 23.0 0.2 1 23 237 259 237 259 0.98
7 20 2.5 2.7e+02 2.7 4.5 1 20 268 287 268 290 0.87
8 20 0.071 7.6 7.6 0.2 3 23 298 317 297 317 0.96
9 20 1.5e-06 0.00016 22.3 0.8 3 23 325 345 324 345 0.97
10 20 1.4e-07 1.5e-05 25.5 2.8 1 23 351 373 351 373 0.99
11 20 0.46 49 5.0 1.9 1 21 462 482 462 484 0.94
12 20 3.9e-05 0.0042 17.9 0.8 2 23 489 511 489 511 0.96
13 20 2.5e-05 0.0027 18.4 4.0 1 23 517 539 517 539 0.98
14 20 0.043 4.6 8.3 0.2 1 23 543 565 543 565 0.97
15 20 5.1e-06 0.00054 20.6 2.0 2 23 572 593 571 593 0.98
16 20 0.00057 0.061 14.2 0.1 1 23 599 621 599 621 0.98
17 20 0.15 16 6.6 1.2 1 23 627 649 627 649 0.97
18 20 8.8e-07 9.3e-05 23.0 0.2 2 23 656 677 655 677 0.97
19 20 8.7e-07 9.3e-05 23.1 1.0 1 23 683 705 683 705 0.98
20 20 2.6e-07 2.7e-05 24.7 1.9 1 23 711 733 711 733 0.99

Sequence Information

Coding Sequence
ATGGAAAGGAAAATTGCGAATCCGCGCTTTGTTCTTCTCCGAAAGATCAATGACCAAACTATTCTGCTCCAGAGCGTACCTTCGTACAGCTGTGATTCCTGCGACGAGAATTTCAACACGGAAGCCGATTTGATAGTGCACAAGACGGAACAATCGATACTACGAACCCGCAAAGCGTTGCGTCAAGCGGAACCAAAATACAAGTGCGACACGTGCGAAAAGACATTTTCGACGAAATTTTTGTTGATGAAACATTGCGTCACGCCGTGCAAATATCCTGTTCTGAAGGACACGATTACGAAGCAGGAACGTCAAGATACAATCGCGCAAATTGTGCGAACTTGTGCGGCGAATAAAAAATCGAAAGAGAATAAAACAACGAAAGGGAATAAGAAGTCGAAGGAGAAGAAAAAATCCGAAGGAAATAAGTCTGGCGAAAACAAAGAGTCGTCGACGGGTTCCATCGAGTGTGACAAATGTGACAAATGCTTCAAGAAGAGAAGATACCTGAAGGTGCACAAAACGTTGCACGAATCCCCGTACATTTGTAACATTTGCGGTTCGAAGTTGACGTCGGAGTATTTTCTCAAGATCCACATACGGCGACACAACAAAGAATTCACGGAGTTCTGCGAGATCTGCAACAAAGGCTTCTACTTGAGAGCGACTCTGAAGAATCACATGAGCGTGCACACCGCCGAGAAGCCTTACGTCTGCGAGATCTGCAACAAGGCGTTCGGCAATCGGGTTTATCTCCGAAGTCACATGCAGATTCACTGCAAACCCGAGATGAGAAAGACGTTCAAGTGCGAGATATGCGACTTCCAAACGTTTTACAGCTACTGCTACAGACAGCACGTGTGGACTCACACGGGCGAGAGTCAAGTTGCGTGCGAGGTGTGCGGCAAACTGATCAGACGGCAGTACATGAAGATACACATGAGGATACACACCGGCGAAAAGCCGGAAATTTGCGAATTCTGCGGCAAAGCGTTCAGCTCGAGGAAGTATCTGATCAAACATCGACGGATTCACACCGGTGAGAAACCGTACCAGTGTAAAATCTGCAAAAAGAGTTTCACTCAACGCGGCACGCTCACTCTGCATCTCAGGAGACACGAGGATCGCAAGTACAACGAGATCAACATACAAAACGTAAAGATGGAATCGATCGGCGAGTTGCAAGATGTTAAATTAGTGAGCTATGAGATATCTAACGTGGAAGAGTATCAGATCGGTCAACAATCGGGAGACGTTACGGAAGCGATCGAATGTAAGTCCGAGACTTCGAACCTGAAAACGAAATCTCCCTCGAGAACAAACGAAACAAGCGTTGCGAAACAGTTTCGTGAACTGAATTCGAGTAAAAGATGCGCGAAGGTTTACGAGTGCGCGCTCTGCGGGAAACAGGAGAACAAGAAGCAGCTGCTGCTTAGGCACATAAAGTGTCACGAGAAAATCGCTCGTTGCGAAGAGTGCGATAAGAACTTCGACAACGAGGAGAAATATCGAAAGCACATGATCAAAATACATCAGAAGGAGAAACCGTTTCAATGCGTCTTGTGCGGCAAGTGTTTCAAGACCGAGGAGTTTCTGAAGACTCACTTGAAGCAGCACAACAAACGCTTCGTCTGCGATATATGCGGCATCTCGAAGGTCTCCGGATACGATTTGCGTCTTCACAAGAAGAAGCACAATCAGGAATACGTGACCAAGTGTAAAGTGTGCAACAAGGGATTTTACACGAAGCAAACGCTCGAGCGACACTTGCTCACGCACACCGGCGAGAAACCGTTCGTTTGCAAGGTGTGCAAGACTCCGTATGCGAGCGCGGCCTATCTCAACATGCACGCGAAGTCTCACGGCGAGCGGGAGAAGCACAAGTGCAATATATGCAATTTCGAGAGCTACTGGAAAGCCGCGTTAAAGATGCATCTGAAAATACACACGGGCGAGAATCAGATCACGTGCGAGGTGTGCGGCAAGTCCGTGAGCAGCAAGAATTATCTCCAGATTCACATGCGCATACACTCGGGCTTGAAGCCGCACGTTTGCGAGATGTGCGGCAAGGCGTTCAGCGTGCAGAAGTATTTGATTGTGCATCGACGAACTCACACCGGCGAGAGACCGTACGAGTGTAAGGTGTGTCAGAGGAGATTCACGCAGCAAGGCTCACTGAACACGCATATGAAGTCTCATAATGTAAATAAGTGA
Protein Sequence
MERKIANPRFVLLRKINDQTILLQSVPSYSCDSCDENFNTEADLIVHKTEQSILRTRKALRQAEPKYKCDTCEKTFSTKFLLMKHCVTPCKYPVLKDTITKQERQDTIAQIVRTCAANKKSKENKTTKGNKKSKEKKKSEGNKSGENKESSTGSIECDKCDKCFKKRRYLKVHKTLHESPYICNICGSKLTSEYFLKIHIRRHNKEFTEFCEICNKGFYLRATLKNHMSVHTAEKPYVCEICNKAFGNRVYLRSHMQIHCKPEMRKTFKCEICDFQTFYSYCYRQHVWTHTGESQVACEVCGKLIRRQYMKIHMRIHTGEKPEICEFCGKAFSSRKYLIKHRRIHTGEKPYQCKICKKSFTQRGTLTLHLRRHEDRKYNEINIQNVKMESIGELQDVKLVSYEISNVEEYQIGQQSGDVTEAIECKSETSNLKTKSPSRTNETSVAKQFRELNSSKRCAKVYECALCGKQENKKQLLLRHIKCHEKIARCEECDKNFDNEEKYRKHMIKIHQKEKPFQCVLCGKCFKTEEFLKTHLKQHNKRFVCDICGISKVSGYDLRLHKKKHNQEYVTKCKVCNKGFYTKQTLERHLLTHTGEKPFVCKVCKTPYASAAYLNMHAKSHGEREKHKCNICNFESYWKAALKMHLKIHTGENQITCEVCGKSVSSKNYLQIHMRIHSGLKPHVCEMCGKAFSVQKYLIVHRRTHTGERPYECKVCQRRFTQQGSLNTHMKSHNVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267007;
90% Identity
iTF_01267722;
80% Identity
-