Basic Information

Insect: Pseudomyrmex concolor
Gene Symbol: -
Assembly: GCA_014839585.1
Location: QVOB01024269.1:3941-7909[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0055 0.62 11.0 0.1 1 20 45 64 45 65 0.95

2 20 0.00024 0.027 15.3 3.7 1 19 83 101 83 102 0.99

3 20 0.00031 0.035 14.9 4.5 2 23 176 197 175 197 0.94

4 20 0.00021 0.024 15.5 0.6 1 23 201 223 201 223 0.98

5 20 0.00012 0.013 16.3 0.5 3 23 231 251 230 251 0.97

6 20 9.1e-07 0.0001 22.9 0.2 1 23 257 279 257 279 0.98

7 20 4.7 5.3e+02 1.8 4.9 1 20 288 307 288 310 0.87

8 20 0.07 7.9 7.5 0.2 3 23 318 337 317 337 0.96

9 20 1.5e-06 0.00017 22.2 0.8 3 23 345 365 344 365 0.97

10 20 1.4e-07 1.6e-05 25.5 2.8 1 23 371 393 371 393 0.99

11 20 0.97 1.1e+02 4.0 1.7 1 21 482 502 482 504 0.93

12 20 0.00018 0.021 15.7 2.2 3 23 511 532 510 532 0.96

13 20 2.5e-05 0.0028 18.4 4.0 1 23 538 560 538 560 0.98

14 20 0.042 4.7 8.2 0.2 1 23 564 586 564 586 0.97

15 20 4.9e-06 0.00056 20.6 2.0 2 23 593 614 592 614 0.98

16 20 0.00029 0.032 15.1 0.1 1 23 620 642 620 642 0.98

17 20 0.15 17 6.5 1.2 1 23 648 670 648 670 0.97

18 20 8.6e-07 9.7e-05 23.0 0.2 2 23 677 698 676 698 0.97

19 20 8.5e-07 9.6e-05 23.0 1.0 1 23 704 726 704 726 0.98

20 20 2.5e-07 2.8e-05 24.7 1.9 1 23 732 754 732 754 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0055	0.62	11.0	0.1	1	20	45	64	45	65	0.95
2	20	0.00024	0.027	15.3	3.7	1	19	83	101	83	102	0.99
3	20	0.00031	0.035	14.9	4.5	2	23	176	197	175	197	0.94
4	20	0.00021	0.024	15.5	0.6	1	23	201	223	201	223	0.98
5	20	0.00012	0.013	16.3	0.5	3	23	231	251	230	251	0.97
6	20	9.1e-07	0.0001	22.9	0.2	1	23	257	279	257	279	0.98
7	20	4.7	5.3e+02	1.8	4.9	1	20	288	307	288	310	0.87
8	20	0.07	7.9	7.5	0.2	3	23	318	337	317	337	0.96
9	20	1.5e-06	0.00017	22.2	0.8	3	23	345	365	344	365	0.97
10	20	1.4e-07	1.6e-05	25.5	2.8	1	23	371	393	371	393	0.99
11	20	0.97	1.1e+02	4.0	1.7	1	21	482	502	482	504	0.93
12	20	0.00018	0.021	15.7	2.2	3	23	511	532	510	532	0.96
13	20	2.5e-05	0.0028	18.4	4.0	1	23	538	560	538	560	0.98
14	20	0.042	4.7	8.2	0.2	1	23	564	586	564	586	0.97
15	20	4.9e-06	0.00056	20.6	2.0	2	23	593	614	592	614	0.98
16	20	0.00029	0.032	15.1	0.1	1	23	620	642	620	642	0.98
17	20	0.15	17	6.5	1.2	1	23	648	670	648	670	0.97
18	20	8.6e-07	9.7e-05	23.0	0.2	2	23	677	698	676	698	0.97
19	20	8.5e-07	9.6e-05	23.0	1.0	1	23	704	726	704	726	0.98
20	20	2.5e-07	2.8e-05	24.7	1.9	1	23	732	754	732	754	0.99

Sequence Information

Coding Sequence: ATGCAAAAAATTAGAGGAACAGATTCCAGAGCTTATCTGAAAAATACGGTGGAAAGGAAAATTGCGAATCCGCGCTTTGTGCTTCTCCGAAAGATCAATGACCAAACTATTCTGCTCCAGAGCGTACCTTCGTACAGCTGTGATTCCTGCGACGAGAATTTCAACACAGAAGCCGATTTGATAGTGCACAAGACGGAACAGTCGATACTACGAACCCGCAAAGCGTTGCGTCAAGCGGAACCAAAATACAAGTGCGACACGTGCGAAAAGACATTTTCGACGAAATTTTTGTTGATGAGACATTGCGCCACTCCGTGCAAATATCCTGTTCCGAAGAACACGGTTACGAAGCAGGAACGTCAAGATACAATAGCTCAATATGTGCGAACTTGTGCGGTGAATAAAAAATCGAAAGAGAATAAAACAACGAAAGGGAATAAGAAGTCGAAGAACAAATCCGAAGAAAAAAAGAAGTCTGAAGAAAATAAGTCTGATGAGAACAAAGAGTCGTCGACGGGTTCTATCGAGTGTGACAAATGTGACAAATGCTTCAAGAAGAGAAGATATCTGAAGGTCCACAAAACGTTGCACGAATCCCCGTACATTTGTAACATTTGCGGCTCGAAGTTGACGTCGGAGTATTTTCTCAAGATTCACATAAGGCGGCACAACAAAGAATTCACGGAGTTCTGCGAGATCTGCAACAAAGGCTTCTACTTGAGGGCGACCCTGAAGAATCACATGAGCGTGCACACCGCCGAGAAACCTTACGTCTGCGAAATCTGCAACAAGGCGTTCGGCAATCGGGTTTATCTCCGAAGTCACATGCAGATTCACTGCAAACCCGAGATGAGAAAGACGTTCAAGTGCGAGATCTGCAACTTCCAAACGTTTTACAGCTACTGCTACAGACAGCACGTGTGGACTCACACGGGCGAGAGTCAGGTTGCTTGCGAGGTTTGCGGCAAACTGATCAGACGGCAATACATGAAGATACACATGAGGATACACACCGGCGAAAAGCCGGAAATTTGCGAATTCTGTGGCAAAGCGTTCAGCTCGAGAAAGTATCTGATCAAACATCGACGGATTCACACCGGTGAGAAACCATACCAGTGTAAGATCTGCAAAAAGAGTTTCACTCAACGCGGCACGCTCACTCTGCATCTCAGGAGACACGAGGATCGCAAGTACAACGAGATCAACATACAAAACTTAAAGATGGAATCGATCGGCGAGTTGCAAGATGTAAAATTAGTGAGCTATCAGATATCAAACGTGGAAGAGTATCAGATCGGTCAACAATCAAGAGACGTTACGGAAGCGATCGAATGTAAATCCGAGACTTCGAACCTGAAAACGAAATCTCTCACGAGAACAAACGAAACAAGCGTTGCGAAACAATTACGTGAACTGAATTGGAGTAAAAGATGTGCGAAGGTTTACGAGTGCGCGCTCTGCGGGAAACAGGAGGACAAGAAGCAGCTGCTGCTGAAGCACATAAAATGTCACGAAGAGAAAATCGCTTGTTGCGAAGAGTGCGATAAGAACTTCGACAACGAGGAGAAATACCGAAAGCACATGATCAAAATACATCAGAAGGAGAAACCGTTTCAATGCGTCTTGTGCGGCAAGTGTTTCAAGACCGAGGAGTTTCTGAAGACTCACTTGAAGCAGCACAACAAACGCTTCGTTTGCGATATATGCGGCATCTCGAAAGTCTCCGGATACGATTTGCGTCTCCACAAGAAGAAGCACAATCAGGAGTACGTGACCAAGTGTAAAGTGTGCAACAAGGGATTTTACACGAAGCAAACGCTCGAGCGACACTTGCTCACGCACACCGGCGAGAAACCGTTCGTGTGCAAGGTGTGCAAGACTCCATACGCGAGCGCGGCTTATCTCAACATGCACGTGAAGTCTCACGGCGAGCGGGAGAAGCACAAGTGCAATATATGCAATTTCGAGAGCTACTGGAAGGCCGCGTTGAAGATGCATCTGAAGATACACACGGGCGAGAATCAGATCACGTGCGAGGTGTGCGGCAAGTCCGTGAGCAGCAAGAATTATCTGCAGATTCACATGCGCATACACTCGGGTTTGAAGCCGCACGTTTGCGAGATGTGCGGCAAGGCGTTCAGCGTGCAGAAGTATTTGATTGTGCATCGACGAACTCACACCGGCGAGAGACCGTACGAGTGTAAGGTGTGTCAGAGGAGGTTCACGCAGCAAGGCTCACTGAACACGCATATGAAGTCTCATAATGTAAATAAGTGA
Protein Sequence: MQKIRGTDSRAYLKNTVERKIANPRFVLLRKINDQTILLQSVPSYSCDSCDENFNTEADLIVHKTEQSILRTRKALRQAEPKYKCDTCEKTFSTKFLLMRHCATPCKYPVPKNTVTKQERQDTIAQYVRTCAVNKKSKENKTTKGNKKSKNKSEEKKKSEENKSDENKESSTGSIECDKCDKCFKKRRYLKVHKTLHESPYICNICGSKLTSEYFLKIHIRRHNKEFTEFCEICNKGFYLRATLKNHMSVHTAEKPYVCEICNKAFGNRVYLRSHMQIHCKPEMRKTFKCEICNFQTFYSYCYRQHVWTHTGESQVACEVCGKLIRRQYMKIHMRIHTGEKPEICEFCGKAFSSRKYLIKHRRIHTGEKPYQCKICKKSFTQRGTLTLHLRRHEDRKYNEINIQNLKMESIGELQDVKLVSYQISNVEEYQIGQQSRDVTEAIECKSETSNLKTKSLTRTNETSVAKQLRELNWSKRCAKVYECALCGKQEDKKQLLLKHIKCHEEKIACCEECDKNFDNEEKYRKHMIKIHQKEKPFQCVLCGKCFKTEEFLKTHLKQHNKRFVCDICGISKVSGYDLRLHKKKHNQEYVTKCKVCNKGFYTKQTLERHLLTHTGEKPFVCKVCKTPYASAAYLNMHVKSHGEREKHKCNICNFESYWKAALKMHLKIHTGENQITCEVCGKSVSSKNYLQIHMRIHSGLKPHVCEMCGKAFSVQKYLIVHRRTHTGERPYECKVCQRRFTQQGSLNTHMKSHNVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01269957; iTF_01267722;
90% Identity: iTF_01267722;
80% Identity: -