Pfla016474.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex flavicornis
Gene Symbol
Hr39
Assembly
GCA_014825475.1
Location
QVNW01000472.1:41909-45315[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 3 2.4e+04 -5.9 5.7 147 165 50 69 23 110 0.49
2 4 3 2.4e+04 -14.0 19.1 59 145 409 504 362 543 0.44
3 4 6e-08 0.00047 20.1 0.0 1 21 612 632 612 637 0.92
4 4 1.3e-70 1e-66 226.5 0.0 88 408 670 1004 641 1004 0.80

Sequence Information

Coding Sequence
ATGTCGGATCAGAACGGGCCCAATGAGGGTCCCCCAGGACCAGGACCTGGCTCGGATTCTTCGGGCTGGTGGCAAAGCACCACGCAAACCTGGAAATCGTCGGCGACCGCCACATCGTCGACCTCGTCGATCTCCACTTCAATAGCGGGTTCCGCCTGCGTCTCCGTCTCTTGCGTCGCGTCCAGCTCGTCCACGACGAGCTCGTCCACGTCGACCAACTCGTCCGCGACCTGTTGCCTCTCGTCGTGCGTCGGTGTTTCCTGCACGATGAGCCCGAGTCGTTCAACGGAGTCGGGCAAGAACGTATCTGTCACTACTATTAACGTGCCCAATCAAGAGATGCACGATGGTAAAGGGATGTGTAAATATCTTGGACGACAGAATGGCGTAACAGTGTCGGTGGTGTCGACTTCCGTGCTGGGAGGCGCGAACGCAGTACCGACGGGCGGAATCTGTACAAATACGGGAGCAGCGCATAATATCGGAATCAGCGGTATCCTCGCCGCGAACGCGGCTGACGTCGACGACGCGGAGGACAGCGACGGCGAGATCAGCAAGATTGATTTCCGAGGTGTTAATCTGCGCTCGAAGAAGAAACGCGAGGTGTCGAACAGCCAGAATGGCGACAAGATCGGTGACGGGGACGCGAATGGCGACAGCGGCGCGTGCTGCGACGATAATTCGCAGCATCAGCCTGAGAGACCTATGTCGTGGGAAGGAGAATTGTCAGATCAAGAAATGTCTTCCAATACAATCACCAATCAGGATCATAACGAGGAAACGTCTATGGAGGGGGTTCAGATATGCAGCGCAAGTCCTGGACCTATGGAGCAGAAATTTCCAATTAAATCAGAACCAGATTTTCGATCCAGCTCGGGTTTCACGATAGGATCGTTCCACGATACCGGCCTGCCCATGACACACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTGAACAGACTCAACAGAGCGACTTGCCGCTTCTCGTAGGCAAGCTTCTCGGCGGATACAACAATTCAACGCCTAATCACAGTCCTGTTCTCAATCCGCGACATCATTTAACTAAGCACAGTCATACCAGATCCCAGGTGCCGTCGCCAGACTCCGCTATTCATTCCGCATACAGCGTCTTCAGTTCGCCGACGCAGAGTCCTCACGCGGCGCGACACTCCGCCCTAGGAGCGGGCAGTCCGATACCGTCCTCGTCGTTATCTTTGTCCCGGCATAGCTTCAATAACTCAACCTCCTCCTTGTCGCTATCGCTGTCGCATTCACTTTCGAGAAACAACTCCGACGCTTCCAGCAGCTGCTACAGCTACGGCTCACTCAGTCCGCCCACGCATTCACCCGTTCAACAACCGAGACATCCGCATTCGCATTCGCAGCATCATCAGCATCAGGTGACGCAAAGTAGTCCGCTGCATCTGCCAGCTTCGTCCGCCGTTGCCGCGCATCATTATTCATCTTCTTCCGTGCCAGGCTCGGAACTGTCTCCGGACGGTCATCCCGTCACGGAGGATCAGGAAGACTGCAGAATACCATCGGCATCGTCAGGTATTTCTACTAGGCAGCAACTAATCAACAGTCCTTGTCCGATTTGCGGCGACAAGATAAGCGGCTTCCATTACGGAATCTTCTCGTGCGAGTCATGTAAGGGATTCTTTAAGCGCACCGTCCAGAATCGTAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCTGGTCACCGTAGCTACAAGGAAGAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAATATGGGTATGAAGCTTGAGGCGATCAGAGAAGATCGTACCAGAGGCGGTAGAAGCACTTATCAGTGTACGTATACTTTACCGGCAAATCTTGTTGGCGGTTCTGCCGGTGGTATGGCTAACGAAAAGCTGACGGTAGCGGGTAACTGCAGCCCGGCGCCAACCGGAAGCGAACACCATTACTCCGCTAGATATCACTCGAATCATTCGCACAAGATGCAAGTGGTGCCTCAACTCTTGCAAGATATCATGGATGTGGAGCATCTCTGGCATTACAACGACAACGAACGAATAAGCGGCAGTCGCGGATTACCCGGGAACACGAGGAACATCGTTGCTGGTGAAAACATGTCGCTCGGCGGATCTGGCGGTGCTTCGGCGTCCAGCGGCATCGAGACTGGTATTGGCGGCGGAAATAACGGAAGCGCGGTGAAATGTTCGTCAAATGATTCCATCAACGCCGATAGCAACAACATACAGGGAGAATCGGTTAGCCCCGTCGTCTCGTCTTCCACTGGGGCCGATCAACGTTCCACAAATGGCAATACTAACAATAATAATGGCAATTCTCAAGGTGCCAGTAATTCCAACGGCAATCCAACGCAACATCCGGATTTTCTGTCTAATCTGTGCAACATTGCGGATCATCGACTGTACAAAATTGTTAAATGGTGCAAGAGTCTGCCGTTGTTTAAGAACATCTCGATCGATGATCAAACCTGCTTGTTAATCAACTCCTGGTGCGAACTATTACTCTTCTCATGTTGCTTTCGCAGCATGAGCACTCCCGGTGAGATAAGAGTGTCTCTTGGCAAGTCGATTACTCTGGAACAAGCAAAGCAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTTACTAATAATCTGCGAAGGCTGCGAGTAGACCAGTATGAATATGTTGCGATGAAGGTGATCGTGCTGCTAACGTCCGATACGAGCGAACTAAAAGAGCCAGAAAAAGTCAGAGCTTCTCAAGAGAAAGCCCTTCAAGCGCTGCAGCAATACACAATCGCAAGGTATCCGGAGATGCCTGCCAAATTCGGTGAATTATTATTGAGAATTCCAGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCGAAACGCGCCGAGGGAGAAGGCAGCTCGTTCAACCTTTTAATGGAATTGTTAAGAGGAGATCACTGA
Protein Sequence
MSDQNGPNEGPPGPGPGSDSSGWWQSTTQTWKSSATATSSTSSISTSIAGSACVSVSCVASSSSTTSSSTSTNSSATCCLSSCVGVSCTMSPSRSTESGKNVSVTTINVPNQEMHDGKGMCKYLGRQNGVTVSVVSTSVLGGANAVPTGGICTNTGAAHNIGISGILAANAADVDDAEDSDGEISKIDFRGVNLRSKKKREVSNSQNGDKIGDGDANGDSGACCDDNSQHQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQICSASPGPMEQKFPIKSEPDFRSSSGFTIGSFHDTGLPMTHNXXXXXXXXXXXXXXXXXXXXLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVTQSSPLHLPASSAVAAHHYSSSSVPGSELSPDGHPVTEDQEDCRIPSASSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCLVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGGSAGGMANEKLTVAGNCSPAPTGSEHHYSARYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNERISGSRGLPGNTRNIVAGENMSLGGSGGASASSGIETGIGGGNNGSAVKCSSNDSINADSNNIQGESVSPVVSSSTGADQRSTNGNTNNNNGNSQGASNSNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQTCLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQAKQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_01267641;
80% Identity
iTF_01269871;