Pelo045205.1
Basic Information
- Insect
- Pseudomyrmex elongatus
- Gene Symbol
- KRBA2
- Assembly
- GCA_014825605.1
- Location
- QVNY01031168.1:49366-52039[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.6e-05 0.0033 19.2 4.4 2 23 353 374 352 374 0.97 2 15 0.00028 0.057 15.3 0.4 2 23 380 401 379 401 0.96 3 15 3.4e-05 0.0071 18.2 0.9 2 23 488 509 487 509 0.97 4 15 2.2e-05 0.0045 18.8 4.7 1 23 515 537 515 538 0.96 5 15 0.00039 0.079 14.9 0.3 1 23 543 565 543 565 0.97 6 15 7.5e-07 0.00015 23.4 0.5 1 23 583 605 583 605 0.98 7 15 1.3e-06 0.00027 22.6 1.2 1 23 611 633 611 633 0.97 8 15 1e-05 0.002 19.9 2.4 1 23 639 661 639 661 0.98 9 15 0.0014 0.29 13.1 0.2 1 23 667 689 667 689 0.99 10 15 9.1e-05 0.019 16.8 0.2 3 23 697 718 696 718 0.96 11 15 2e-05 0.004 18.9 1.3 1 23 724 746 724 746 0.98 12 15 0.00043 0.089 14.7 4.7 1 23 752 774 752 774 0.98 13 15 5.5e-06 0.0011 20.7 0.4 1 23 780 803 780 803 0.97 14 15 1.9e-06 0.00039 22.1 0.6 1 23 809 831 809 831 0.97 15 15 4.8e-06 0.00098 20.9 5.0 1 23 837 859 837 859 0.99
Sequence Information
- Coding Sequence
- ATGAACAAAGATATGCCATTGAGCATAGAATGGATTCCAAAAGATGCGTATACACACAATTCTCTGGATCATTTTCTGCCGGGAAATCAAGATGAACGCAATGTTGTATTTATAAAGCAAGAACCTGAGTTCTTGGAAAAAGCGTTAAACACACAAACTTTGAAAAACATGCTTGTTACCATGCAAGTCCCTGAATCTAAGGACGAAGATGAGAACAAACAACAAAACTGTCAGGAAACACCGACTCAATGTCAAACAGAATCTTCCAAGAAGATGCCAGAACAATTAACTGAGACTTCTAAGAAATCATACAACAAAGCTCGCATTGACGTAATAGAGATCTCAGCAGAATCTGCATCTGAATATCGATATCTTTTCACTTACGAAGATCAATCCTCCAAGTTCACAGTGCTAAGAGCTCTCCGCAGCAACACTGCCAAAGAAGTTGCGGCAAAATTGTTAGATGTGTTGGCGATTATAGGAGCGCCAAGAGTTTTACGAAGCGGCAATGGACGTAAGTTTGCGGAACAAGTTGTGCGCGAACTGCGTTCGCTGTGCAAGAATTTCTTCATATTACACGGAGAGTTGCCTAAATCCGAAGTTAGCTGCAGAGATTTTAAGAGTTTGCTCGAATCCTGGATGAGGGAGAATTCGACCAGAATCTGGTGGGAGGGTTTGAATTTCGTACAGATGCTTCATAATACGACGTATCACTGTCCGAATGGCAGAGTTCCGTGTGATATGTTGTTCGGACGAAATGTACGCGATAAGTTTCAAAATACCTGCGCGGAAAAGGACACGGAGAATGTGTGGACGGAAGAAAACTGGATTGAGAGTTCGTCGATCGATTCCTTATCGATGGTTCATGAGGAAAATGAAAACATACAAGAAGTACATAGTCAAAACGCGTCTTCGAAAGACAACGACAACGGTTTTAGTTTCGTCGATGTAAAAAACGAAGCTGTCGTGAGCAATAAGCGCAGAACGGATTCGCAATGTACTGATGAAACAGACGCGAGAATCGAATCGAAGAGCAACGATAACGCTCAATCTCTCAAGTGCAAATATTGTCAAAAACAATACGCGAGACTCGGACATTACAAGAATCACATGAGGACTCACAGAACAGAACAACTGCAGTGTAAGCTATGCGGCAAAAGTTTTAGGGTTGTGAGATTGTACGAGAAGCACGTTGCGTCACACGGACAGGACAAATTAGATAACAAGGCAGAAGTCAATAAAAATATCAAAAGCAACGGCGACGCGTTAACGGCCATACTTAAGGAGGAAAAATGTCAAGCGAAAACACACGAAATATCCAAGATAGCGAATGAAGATCGTGACACGTCATTGGTTACAAAAGATTCCTGTGATAAAATCGCTGAGAACTCGAGTCAAAGCGTAAGACGAAAGTTGTCCGCGGAAAGCAGCGTCCGCGTGTCGAAAGCGCAATCGCCCTTAGAGTGTACATACTGCAAGCAGAAGTTCAGCTTTCCGAGCGTGCTAGTAAGGCACTTGCGGTCGCACACAAATGAGCGACCGTACGTGTGCAAGGTGTGCAACAAGAGCTTCAAACAGCTGGGACATCTGAGCCAACACTCTCTGACGCATCACGACTATCGCTCGTTCCAGTGCGCGGTTTGCGGTGTGAAGTTCGAGTCGCTGGACTTTTTGAAGAAACACGCGAGCTCGCACGAGGGCGAGCATGGTGCAATGACAACGCCCAGGATTCGCGAGTATCGCGTGTTCGAGTGCGACACCTGCAAAAAGGTGTTCGCGACGAAGAGCGTCTTGGAGCGGCACATACTCACGCACACGCAGGAGCGCCAGTACGATTGTAAAGTATGCGGCAAACGCTTCAAGCAGGCCGGCCATGTGAAATCGCACATGCTGATACACACCGGCGAGCGTCGCTTCCAGTGCACCGTTTGCTCGAAGCGCTTCAGCCTGTCCAACTCGCTGAAGAAGCACATGTACGTGCACAATGGCGAGAAGCCGTATCAGTGCGACGTGTGCGGCGCGCGGTTTCTGGAGAAGCGCAATCTCAACGGCCACCTGCTTACGCACACCAACGAGCGTCCGCACGGTTGCAAGATATGCGGCAAACGTTACACCCTGGCCGATACTCTACGACGTCACGTAAGCGTTGCGCACAAGGACGGTCGCACTTATCAGTGCGAGATCTGCGCGAAGATGTTCAAGCAGCTCGCTCATCTGTCGGTACACAAAAAGGTCCACAACGACGAGCGGCCGTTTCAATGTCACTTGTGCGAGAAGAATTTCAAGCACAAAAACGTGCTCAAGTCGCATCTGGCGATTCACGCAAACGTACGGCCGTTCGAGTGTGATGTGTGCAAAGCCACCTTTGTGAGGAAGACGAACTTGCAGACGCACATCTCGTCCGCGCACATGAACGAGCGTCCGTATGTGTGCACTATCTGCGGCAAGCGTTTCAAACAGATCAGCCATTTAAACGGCCACGTGATTGTGCACAGCAATCTGATGCCATACAAATGTGACTTTTGCGATCGTCGATGCAATCGACTCGACAATCTGAAGAAGCACATGCGTCTTCATACGAAGAACAAAGAGTGA
- Protein Sequence
- MNKDMPLSIEWIPKDAYTHNSLDHFLPGNQDERNVVFIKQEPEFLEKALNTQTLKNMLVTMQVPESKDEDENKQQNCQETPTQCQTESSKKMPEQLTETSKKSYNKARIDVIEISAESASEYRYLFTYEDQSSKFTVLRALRSNTAKEVAAKLLDVLAIIGAPRVLRSGNGRKFAEQVVRELRSLCKNFFILHGELPKSEVSCRDFKSLLESWMRENSTRIWWEGLNFVQMLHNTTYHCPNGRVPCDMLFGRNVRDKFQNTCAEKDTENVWTEENWIESSSIDSLSMVHEENENIQEVHSQNASSKDNDNGFSFVDVKNEAVVSNKRRTDSQCTDETDARIESKSNDNAQSLKCKYCQKQYARLGHYKNHMRTHRTEQLQCKLCGKSFRVVRLYEKHVASHGQDKLDNKAEVNKNIKSNGDALTAILKEEKCQAKTHEISKIANEDRDTSLVTKDSCDKIAENSSQSVRRKLSAESSVRVSKAQSPLECTYCKQKFSFPSVLVRHLRSHTNERPYVCKVCNKSFKQLGHLSQHSLTHHDYRSFQCAVCGVKFESLDFLKKHASSHEGEHGAMTTPRIREYRVFECDTCKKVFATKSVLERHILTHTQERQYDCKVCGKRFKQAGHVKSHMLIHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPHGCKICGKRYTLADTLRRHVSVAHKDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYVCTICGKRFKQISHLNGHVIVHSNLMPYKCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267008;
- 90% Identity
- iTF_01267720;
- 80% Identity
- -