Pelo009133.1
Basic Information
- Insect
- Pseudomyrmex elongatus
- Gene Symbol
- gsb-n
- Assembly
- GCA_014825605.1
- Location
- QVNY01004680.1:15052-21422[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-72 1.4e-68 230.0 0.4 1 125 18 139 18 139 0.99
Sequence Information
- Coding Sequence
- ATGGATGTCACCAGCGGAATGAGGCCTATTTTTGGCGGATATCCGTTTCAAGGACAAGGACGGATGAATCAGCTGGGAGGGGTGTTCATCAACGGTCGACCTCTCCCTAATCACATTCGTCTGAAAATCGTAGAAATGGCTGCCGCTGGAGTTCGTCCTTGTGTTATTTCCCGACAGCTCCGTGTCTCTCACGGTTGCGTCTCGAAAATCCTGAACAGGTATCAGGAAACAGGATCCATTCGTCCTGGAGTGATCGGTGGTAGCAAACCGCGAGTGGCCACACCAGAAGTTGAGGCGAGGATCGAAGAATTAAAGAGGGACAATCCGGGAATATTTTCGTGGGAAATCAGGGACAAACTCATGAAGGAGGGATTCTCGGATCCACCAAGCGTCAGCTCCATCAGCAGGCTTCTTCGAGGCGGACGACCAGGAGATGACGGGAAAAAAGATTACACAATTAATGGCATATTAGGCGGCGGTAAGTCAAAATTCTTCTTCTCTTCGTAG
- Protein Sequence
- MDVTSGMRPIFGGYPFQGQGRMNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPEVEARIEELKRDNPGIFSWEIRDKLMKEGFSDPPSVSSISRLLRGGRPGDDGKKDYTINGILGGGKSKFFFSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01068922;
- 90% Identity
- iTF_01269745; iTF_01268220; iTF_00939494; iTF_01405638; iTF_00756585; iTF_01408139; iTF_01414123; iTF_00754576; iTF_00159058; iTF_00937970; iTF_00996983; iTF_00451888; iTF_01409047; iTF_01407217; iTF_01089944; iTF_00885049; iTF_00765518; iTF_00306202; iTF_01493533; iTF_01492834;
- 80% Identity
- iTF_01268220; iTF_01408139; iTF_01405638; iTF_00885049; iTF_00765518;