Pelo021181.1
Basic Information
- Insect
- Pseudomyrmex elongatus
- Gene Symbol
- -
- Assembly
- GCA_014825605.1
- Location
- QVNY01018316.1:1525-3847[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-08 0.00014 22.9 0.0 1 38 9 46 9 50 0.94 2 2 2.4 4.6e+03 -1.1 0.0 3 16 654 667 653 667 0.82
Sequence Information
- Coding Sequence
- ATGGCTAAATCTCGCAAAAGTTGGACGCCAGAAAAGATGGATTCGGCAGTCAAAATGATCATCAATAAAGAGTGTGGTTTCAAATTAGCTGCCAGATTACATCGAGTTCCTGTTACAACGCTGAAAAGATACGTCAATCAAATAAGAGCTGAGAACTTTCCGGTGGAAAATACCATGGATGTGGTGAATGTTGCTCTCGGCCGGAAACCTGCATTGGGAATTGGTTTAGAAAATGAACTAGTGAAGTATTGTCTCGAAATGGATGCTACGTATTATGGATTACGAAGAAGAGATATCAAACGGATACGCCATCCATTCTCAGTTTCGAGTGCATCTGCCGGAAAAAAATGGCTCAGAAATTTTTTACGAAGACACCCTGAACTAAGCTTTAGAAAACCGCAGTCCATCAGCATCGCTCGAGTTCAGGCGTTTACTAAAGAGAATATCAGCCGATTTTTCGATGTTTTAAAGCCAGAATTGCAGAAAATTAAATTCAAAGCTGATAGGATTTTCAACGTAGACGAAAGTGGAATTACGGTGGTTCAGCATGCGCCTGAAGATAATTTGAATGTTCAAAAAAGTTCTCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTTAGGTGACGGATTACCCGGTGGTTCCATCCCAGCTTATTCTTCATCAGGATGGATAACAGGTCCATTATTTACGAAATGGTTCGTTCACTTTTTGGAAGTCACAAATTCGTCGAAGGAAAAACCCAGTGTCCTAATTTTGGATGGTCATTACTCGCATACACGCAATGTCGATCTCGTAACACTGGCCAAAGATCATGGAGTGTCGCTCGTTTGCTTACCGCCTCATACAAGCAATAAAACTCAGCCTCTCGACGTAAGCTTCATGAAACCACTGAAATCGTACTACTCCACTGCTATCGAAACTTGGCTTGCGGGTCATGAAGGTCGAATTATTACGCATGCCCAAGTCGCTCCTCTTTTTTCCCAAGCCTATAAATTAGCAGCCACGATACCAGTAGCAGAGCACGGATTCACAAAAACTGGAATTTTTCCTTTTCAACCAGGTGTGTTCAAACCTGAAGATTTTAAGATTGGAAAAGACGCGATAAGCAAGAAAAATAATCCACCTGCGAGTAGCAGCCCGAGCACCTCCGACACATCTTCATCCACCCCCAGCACGCCGTCATCCACCCCCAGCACGCCGTCATCCACCGACAGCACCGTAATTGTAGCTGTCACCCCTGTGAGTCAACCTCAACCACTCACTGATTCGAATTCGCAAACCCACGTTTCGCCTGAAGACATCCGAGCTGTCCCAATAATCCAAGATGCGGCACCCTCCAACCGACGTGGACAAGCTATGGTGTTTTCTACCTCTCCATACAAAAATTCTTTAGAGGATGCGAAAAAAAGACAAGAGAAGAAAGAGGAAAAGAAGGCTGCGAATCAAGGAAAGGAGAAGACCGTGAAAAAAGCCAAAACCGACGAAGAAAAAAATAAACCAACAGCGAGAAAAGCGACTGTTTCGAAAAAAAAGGCTGCTTCGAAGAAACCGGTTTCCTCTCATGAAGATAAAATTGTGCCATCCACCTCGAAACTCACCGAAACCCCGAAAGGGCAAAAGAAGAACACCGAAAGACCAAAACGGAAAGTCTCAAAAAGAAAAATCTCATTTTCGGAATCGGAGAGCAGTGAGAGCAGCGCCGATGAAGAAGTGCCCTATGCGTCCTCGACTGATTCTGACGATGGTGACGATGGTGACGACGAGTGCCAGTTTTGTGGTCAGCCGTTCAAAAATGATAAGCGAGGGGAAAAGTGGATCATGTGCAGCAAATGTCATGTGTGGTGCCATGAAGACTGCGACGCTGCAATAGAAGATTGCAGCAACAAGAAGAAATATATTTGTTCTACATGTTTGAATTCGTGA
- Protein Sequence
- MAKSRKSWTPEKMDSAVKMIINKECGFKLAARLHRVPVTTLKRYVNQIRAENFPVENTMDVVNVALGRKPALGIGLENELVKYCLEMDATYYGLRRRDIKRIRHPFSVSSASAGKKWLRNFLRRHPELSFRKPQSISIARVQAFTKENISRFFDVLKPELQKIKFKADRIFNVDESGITVVQHAPEDNLNVQKSSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALGDGLPGGSIPAYSSSGWITGPLFTKWFVHFLEVTNSSKEKPSVLILDGHYSHTRNVDLVTLAKDHGVSLVCLPPHTSNKTQPLDVSFMKPLKSYYSTAIETWLAGHEGRIITHAQVAPLFSQAYKLAATIPVAEHGFTKTGIFPFQPGVFKPEDFKIGKDAISKKNNPPASSSPSTSDTSSSTPSTPSSTPSTPSSTDSTVIVAVTPVSQPQPLTDSNSQTHVSPEDIRAVPIIQDAAPSNRRGQAMVFSTSPYKNSLEDAKKRQEKKEEKKAANQGKEKTVKKAKTDEEKNKPTARKATVSKKKAASKKPVSSHEDKIVPSTSKLTETPKGQKKNTERPKRKVSKRKISFSESESSESSADEEVPYASSTDSDDGDDGDDECQFCGQPFKNDKRGEKWIMCSKCHVWCHEDCDAAIEDCSNKKKYICSTCLNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267489; iTF_01271139;
- 90% Identity
- -
- 80% Identity
- -