Pcub010126.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- -
- Assembly
- GCA_014825685.1
- Location
- QVOA01017220.1:1017-3351[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-07 0.0003 20.8 0.0 1 38 9 46 9 50 0.93 2 2 2.4 2e+03 -1.0 0.0 3 16 592 605 591 605 0.82
Sequence Information
- Coding Sequence
- ATGGCTAAATCTCGCAAAAGTTGGACGCAAGAAAAGATGGATTCGGCAGTCAAAATGATCATCAATAAAGAGTGTGGTTTCAAATTAGCTGCCAGATTACATCGAGTTCCTGTTACAACGCTGAAAAGATACGTCAATCAAATAAGAGCTGAGAACTTTCCGGTGGAAAATACCATGGATGTGGTGAATGTTGCTCTCGGCCGGAAACCTGCATTGGGAATTGGTTTAGAAAATGAACTAGTGAAGTATTGTCTCGAAATGGATGCTACGTATTATGGATTACGAAGAAGAGATATCAAACGGATGGCCTTTCAGCTAGCATTACGTAATAATTTACGCCATCCATTCTCAGTTTCGAGTGCATCTGCCGGAAAAAAATGGCTCAGAAATTTTTTACGAAGACACCCTGAACTAAGCTTTAGAAAACCGCAGTCCATCAGCATCGCTCGAGTTCAGGCGTTTACTAAAGAGAATATCAGCCGATTTTTCGATGTTTTAAAGCCAGAATTGCAGAAAATTAAATTCAAAGCTGATAGGATTTTCAACGTAGACGAAAGTGGAATTACGGTGGTTCAGCATGCGCCTGAAGATGTTCTCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTTAGGTGACGGATTACCCGGTGGTTCCATCCCAGCTTATTCTTCATCAGGATGGATAACAGGTCCATTATTTACGAAATGGTTCGTTCACTTTTTGGAAGTCACAAATTCGTCGAAGGAAAAACCCAGTGTCCTAATTTTGGATGGTCATTACTCGCATACACGCAATGTCGATCTCGTAACACTGGCCAAAGATCATGGAGTGTCGCTCGTTTGCTTACCGCCTCATACAAGCAATAAAACTCAGCCTCTCGACGTAAGCTTCATGAAACCACTGAAATCGTACTACTCCACTGCTATCAAAACTTGGCTTGCGGGTCATGAAGGTCGAATTATTACGCATGCCCAAGTCGCTCCTCTTTTTTCCCAAGCCTATAAATTAGCAGCCACGATACCAGTAGCAGAGCACGGATTCACAAAAACTGGAATTTTTCCTTTTCAACCAGGTGTGTTCAAACCTGAAGATTTTAAGATTGGAAAAGACGCGATAAGCAAGAAAAATAATCCACCTGCGAGTAGCAGCCCGAGCACCTCCGACACATCTTCATCCACCCCCAGCACGCCGTCATCCACCGACAGCACCGTAATTGTAGCTGTCACCCCTAAGAAAGAGAAAAAGAAGGCTGCGAATCAAGGAAAGGAGAAGACCGTGAAAAAAGCCAAAACCGACGAAGAAAAAAATAAACCAACAGCGAGAAAAGCGACTGTTTCGAAAAAAAAGGCTGCTTCGAAGAAACCGGTTTCCTCTCATGAAGATAAAATTGTGCCATCCACCTCGAAACTCACCGAAACCCCGAAAGGGCAAAAGAAGAACACCGAAAGACCAAAACGGAAAGTCTCAAAAAGAAAAATCTCATTTTCGGAATCGGAGAGCAGTGAGAGCAGCGCCGATGAAGAAGTGCCCTATGCGTCCTCGACTGATTCTGACGATGGTGACGATGGTGACGACGAGTGCCAGTTTTGTGGTCAGCCGTTCAAAAATGATAAGCGAGGGGAAAAGTGGATCATGTGCAGCAAATGTCATGTGTGGTGCCATGAAGACTGCGACGCTGCAATAGAAGATTGCAGCAACAAGAAGAAATATATTTGTTCTACATGTTTGAATTCGTGA
- Protein Sequence
- MAKSRKSWTQEKMDSAVKMIINKECGFKLAARLHRVPVTTLKRYVNQIRAENFPVENTMDVVNVALGRKPALGIGLENELVKYCLEMDATYYGLRRRDIKRMAFQLALRNNLRHPFSVSSASAGKKWLRNFLRRHPELSFRKPQSISIARVQAFTKENISRFFDVLKPELQKIKFKADRIFNVDESGITVVQHAPEDVLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALGDGLPGGSIPAYSSSGWITGPLFTKWFVHFLEVTNSSKEKPSVLILDGHYSHTRNVDLVTLAKDHGVSLVCLPPHTSNKTQPLDVSFMKPLKSYYSTAIKTWLAGHEGRIITHAQVAPLFSQAYKLAATIPVAEHGFTKTGIFPFQPGVFKPEDFKIGKDAISKKNNPPASSSPSTSDTSSSTPSTPSSTDSTVIVAVTPKKEKKKAANQGKEKTVKKAKTDEEKNKPTARKATVSKKKAASKKPVSSHEDKIVPSTSKLTETPKGQKKNTERPKRKVSKRKISFSESESSESSADEEVPYASSTDSDDGDDGDDECQFCGQPFKNDKRGEKWIMCSKCHVWCHEDCDAAIEDCSNKKKYICSTCLNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268958;
- 90% Identity
- -
- 80% Identity
- -