Pden006305.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex dendroicus
Gene Symbol
Hr39
Assembly
GCA_014825645.1
Location
QVNZ01013201.1:25272-28685[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3 2.6e+04 -5.8 6.6 133 163 43 73 22 109 0.51
2 5 0.36 3.2e+03 -2.3 1.8 97 163 334 398 279 420 0.66
3 5 3 2.6e+04 -14.6 19.8 59 144 407 501 349 540 0.46
4 5 7e-08 0.00061 19.8 0.0 1 21 610 630 610 638 0.93
5 5 2.1e-70 1.8e-66 225.8 0.0 91 408 671 1003 641 1003 0.76

Sequence Information

Coding Sequence
ATGTCGGATCAGAACGGGCCCCCCCATGAGGGTCCCCCAGGACCAGGACCCGGCTCGGATTCTTCGGGCTGGTGGCAAAGCACCACGCAAACGTGGAAATCGTCGGCGAGCGCCACATCGTCGACCTCATCGATCTCCACTTCAATAGCGAGTTCCGCCTGCGTCTCCGTCTCCTGCGTCGCGTCCAGCTCGTCTACGACGAGTTCGTCCACGTCGACCAACTCGTCCGCGACCTGTTGCCTCTCGTCGTGCATCGGTGTTTCCTGCACGATGAGTCCGAGCCGTTCAACAGAGTCGGGCAAGAACGTATCTGTTACTACTATTAACGTGCCCAATCAAGAGATGCACGATGGTAAAGGGATGTGTAAATATCTTGGACGACAGAATGGCGTAACAGTGTCGGTGGTGTCGACTTCCGTGCTGGGAGGCGCGAACGCAGTACCGACGAGCGGAATCTGTACAAATACGGGAGCAGCGCATAACATCGGAATCAGCGGTATTCTCGCCGCGAACGCGGCTGACGTCGACGACGCGGAGGACAGCGACGGCGAGATCAGCAAGATTGACTTCCGAGGTGTTAATCTGCGCTCGAAGAAGAAACGCGAGGTGTCGAACAGCCAGAATGGCGACAAGATCGGTGACGGGGACGCGAATGGCGATGGCGGCGCGTGCTGCGACGATAATTCGCAGCATCAACCCGAGAGACCCATGTCGTGGGAAGGAGAACTGTCAGATCAAGAAATGTCTTCCAATACAATCACCAATCAGGATCATAATGAGGAAACGTCTATGGAGGGGGTTCAAGTATGCAGCGCAAGTCCCGGACCTATGGAGCAGAAATTTCCAATTAAATCAGAGCCGGATTTTCGATCCAGCTCGGGTTTCACGATAGGATCGTTTCACGATACCGGCCTGCCCATGACACACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAATCTTGAACAGACTCAACAGAGTGACCTGCCGCTTCTCGTAGGCAAGCTTCTCGGCGGATACAACAATTCAACGCCTAATCACAGTCCTGTTCTCAATCCGCGACATCATTTAACTAAGCACAGTCATACCAGATCCCAGGTGCCGTCGCCAGACTCCGCTATTCATTCCGCATACAGCGTCTTCAGTTCGCCGACGCAGAGTCCTCACGCGGCGCGACACTCCGCTCTAGGAGCGGGCAGTCCGATACCGTCTTCGTCGTTATCCTTGTCCCGGCATAGCTTCAATAACTCAACCTCCTCCCTGTCGCTATCGCTGTCGCATTCACTTTCGAGAAACAACTCCGACGCTTCCAGCAGCTGCTACAGCTACGGCTCACTCAGTCCGCCCACGCATTCACCCGTTCAACAACCGAGACATTCGCATTCGCATTCGCAGCATCACCAGCATCAGGTGACGCAAAGTAGTCCGCTGCATCTGCCAGCTTCGTCCGCCGTTGCCGCGCATCATTATTCATCTTCTTCCGTGCCAGGCTCGGAACTGTCTCCGGACGGTCATCCCGTCACGGAGGATCAGGAAGACTGCAGAATACCTTCGGCGTCGTCAGGCATTTCTACTAGGCAGCAACTAATCAACAGTCCCTGTCCGATTTGCGGCGACAAGATAAGCGGCTTTCATTATGGAATCTTCTCTTGCGAGTCATGTAAAGGATTCTTTAAGCGCACCGTCCAGAATCGTAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCTGGTTACCGTAGCTACAAGGAAGAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATCAGAGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAGTGTACGTACACTTTACCGCCAAATCTTGTTGGTAGTTCTGCCGGTGGTATGGCCAACGAAAAACTGACGGTAGCGGGTAACTGCAGTCCGGCGCCAACCGGAAGCGAACATCATTATTCCGCTAGATATCACTCGAATCATTCGCACAAGATGCAAGTGGTGCCTCAACTCTTGCAAGATATTATGGATGTGGAGCATCTCTGGCATTACAACGACAACGAACGAATAAGCGGCAGTCGCGGATTACCCGGGAATGCGAGGAACATCGTTACTGGTGAAAACATGTCGCTCGGCGGATCTGGCGGTGCGGCCTCGGCGTCCAGCGGCATCGAGACTGGTATTGGCGGCGGAAATAACGGAAGCGCGGTGAAATGTTCGTCAAATGATTCCATCAACGCCGATAGCAACAACATACAGGGAGAATCGGTTAGCCCCGTCGTCTCGTCTTCCACAGGGGCCGATCAACGTTCCACAAATGGCAATACTAACAATAATAACGGCAATTCTCAAGGTGCCAGTAATTCCAACGGCAATCCAACGCAACATCCGGATTTTCTGTCTAATCTGTGCAACATTGCGGATCATCGACTGTACAAAATTGTTAAATGGTGCAAGAGTCTGCCGTTGTTTAAGAATATCTCGATCGATGATCAAACCTGCTTGTTAATCAATTCCTGGTGCGAACTATTACTCTTCTCATGTTGCTTTCGCAGCATGAGCACTCCCGGTGAGATAAGAGTGTCTCTTGGCAAGTCGATTACTCTGGAACAAGCAAAGCAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTCACTAATAATCTGCGAAGGCTGCGAGTAGACCAGTATGAATATGTTGCGATGAAGGTGATCGTGTTGCTAACGTCCGATACGAGCGAACTAAAAGAGCCAGAAAAAGTCAGAGCTTCTCAAGAGAAAGCCCTTCAAGCGCTGCAGCAATACACAATCGCAAGGTATCCGGAGATGCCTGCCAAATTCGGTGAACTATTATTGAGAATTCCAGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCGAAACGCGCCGAGGGAGAAGGCAGCTCGTTCAACCTTTTAATGGAATTGTTAAGAGGAGATCACTGA
Protein Sequence
MSDQNGPPHEGPPGPGPGSDSSGWWQSTTQTWKSSASATSSTSSISTSIASSACVSVSCVASSSSTTSSSTSTNSSATCCLSSCIGVSCTMSPSRSTESGKNVSVTTINVPNQEMHDGKGMCKYLGRQNGVTVSVVSTSVLGGANAVPTSGICTNTGAAHNIGISGILAANAADVDDAEDSDGEISKIDFRGVNLRSKKKREVSNSQNGDKIGDGDANGDGGACCDDNSQHQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSASPGPMEQKFPIKSEPDFRSSSGFTIGSFHDTGLPMTHNXXXXXXXXXXXXXXXENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHSHSHSQHHQHQVTQSSPLHLPASSAVAAHHYSSSSVPGSELSPDGHPVTEDQEDCRIPSASSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCLVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPPNLVGSSAGGMANEKLTVAGNCSPAPTGSEHHYSARYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNERISGSRGLPGNARNIVTGENMSLGGSGGAASASSGIETGIGGGNNGSAVKCSSNDSINADSNNIQGESVSPVVSSSTGADQRSTNGNTNNNNGNSQGASNSNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQTCLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQAKQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_01267641;
80% Identity
iTF_01268356;