Pden011692.1
Basic Information
- Insect
- Pseudomyrmex dendroicus
- Gene Symbol
- -
- Assembly
- GCA_014825645.1
- Location
- QVNZ01017493.1:7991-13232[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-10 4.7e-07 29.9 0.0 1 35 78 113 78 118 0.91
Sequence Information
- Coding Sequence
- ATGCGCGGGAGGGCAGAAGGAGGACGAAACTTTTCAAATGAGCCAACTTTGGGTGTGTCTTGCGCTTTTGGTGCTCGCGTCTCGCAAAACCCCTTTCGAAAGCCTCGCATATTAGCAAAGTTGTTGGTTGAGGCCAAGTTGTTGGAGTCGTCCCACGCTTGGCTCGGTGCCTCCACCTCCAGTATAGCAGCTGACTATACGAGCCTGCTGAAGCTGAAGGCGCCCACGTGGACGCGGAACGATCTTCACGAGGCGATGGAGGCCGTGGTAACCCAGAAGATGCGCTTTACCCAGGCATCGACTAAGTACGGCATCCCCAAGGGCACCTTGTACGACAACATCCTCGGCAAATGCAAGAGAATGATGATCCTCGAGAAAGCGAACCTCGACCCGAACGAGGAAACCGCGGTGCTCGAATTCTGTTGCGATATCAGCGTTAGTCCATACAATCGGCGCACAAAAAAATCGTTAAACGCGATACTAGACTTCGTCGAGCGAATCAAGCGGAAGCGCGATCCGAAATTCCAGTTCGCCGGCCTGGAGGGCTTCCGCTGGTGGTGGGCTTTTTGTAAGAAGCACTCGATAGTCTCGCTCTACTTTAACGACGAGAACGAGAACGGCGCCGACTCCTCTTAA
- Protein Sequence
- MRGRAEGGRNFSNEPTLGVSCAFGARVSQNPFRKPRILAKLLVEAKLLESSHAWLGASTSSIAADYTSLLKLKAPTWTRNDLHEAMEAVVTQKMRFTQASTKYGIPKGTLYDNILGKCKRMMILEKANLDPNEETAVLEFCCDISVSPYNRRTKKSLNAILDFVERIKRKRDPKFQFAGLEGFRWWWAFCKKHSIVSLYFNDENENGADSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00125834;
- 90% Identity
- iTF_01267479;
- 80% Identity
- iTF_01267479;