Aash016515.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- -
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000051.1:773383-783125[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-11 1.4e-08 34.7 0.0 2 35 77 111 76 116 0.91
Sequence Information
- Coding Sequence
- ATGAACCAACTTTGCGTGTGTCTTGCGCTTTCGGTGCCCCCGCGTCTCGTGAACCCCCTTCGAAAGCCTCGCATATTAGCAAAGTTGTCGGCCGAGGTGAACAGTTCGGATTACCTCGCGTTTCCGGCCAAGTTGTTGGAGTCGTCCCACGCTTGGCTCGGCGCCTCCACCTCCAGTATAGCAGCTGACTATACGACCCTGCTGAAGCTGAAGGCGCCCACGTGGACGCGGCACGATCTCCAGGAGGCGATCGAGGCCGTGGTGACCCAGAAGATGCGCTTCACCCAGGCGTCCACCAAGTACGGCATCCCGAAGGGCACCCTCTACGACAACATCCTCGGCAAGTCCAAGAGGATGATGATCCTCGAGGAGACCGCCCTCGATCCGGGCGAGGAGTCGGCGGTGCTCGAGTTCTGCTGTGACATCAGCGTCAGCCCGTACAATCGGCGCACGAAGAAATCCCTGAACGCGATACTGAACTTCGTCGAGCGTCTCAGGCGGAAGCACGACCCCGGCTTCGTGTTCACCGGACTGTCGGGCTTCCGCTGGTGGTGGGCCTTTTGCAAGAAGCACTCGATAGTCTCGCTTTACATCAACGACGAGAACGAGAACGGTGCCGATTCCTCTTAA
- Protein Sequence
- MNQLCVCLALSVPPRLVNPLRKPRILAKLSAEVNSSDYLAFPAKLLESSHAWLGASTSSIAADYTTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMILEETALDPGEESAVLEFCCDISVSPYNRRTKKSLNAILNFVERLRRKHDPGFVFTGLSGFRWWWAFCKKHSIVSLYINDENENGADSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215630; iTF_01406416; iTF_01267479; iTF_01269718; iTF_01266807; iTF_01268952; iTF_01271128; iTF_01268190; iTF_00011008; iTF_00881154; iTF_01391880; iTF_01390121; iTF_01391024; iTF_01392688; iTF_01394201;
- 90% Identity
- -
- 80% Identity
- -