Pcub007404.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudomyrmex cubaensis
Gene Symbol
Hr39
Assembly
GCA_014825685.1
Location
QVOA01004321.1:12431-15837[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3 2.4e+04 -5.8 5.6 146 164 49 68 23 110 0.49
2 5 0.58 4.6e+03 -2.9 2.9 97 163 333 397 240 422 0.66
3 5 3 2.4e+04 -13.7 18.9 59 145 406 501 357 540 0.44
4 5 5.5e-08 0.00044 20.2 0.0 1 21 609 629 609 642 0.92
5 5 7.2e-71 5.7e-67 227.3 0.0 87 408 666 1001 640 1001 0.82

Sequence Information

Coding Sequence
ATGTCGGATCAGAACGGACCCAATGAGGGTCCCCCGGGACCAGGACCCGGCTCGGATTCTTCGGGTTGGTGGCAAAGCACCACGCAAACGTGGAAATCGTCGGCGACCGCCACATCGTCGACCTCGTCGATCTCCACTTCAATAGCGGGTTCCGCCTGCGTCTCCGTCTCCTGCGTCGCGTCCAGCTCGTCAACGACGAGTTCGTCCACGTCGACCAACTCGTCCGCGACCTGTTGCCTCTCGTCGTGCATCGGTGTTTCCTGCACGATGAGTCCGAGCCGTTCAACGGAGTCGGGCAAGAACGTATCTGTTACTACCATTAACGTGCCTAATCAAGAGATGCACGATGGTAAAGGGATGTGTAAATATCTTGGACGACAGAATGGCGTAACAGTGTCGGTGGTGTCGACTTCCGTGCTGGGAGGCGCGAACGCAGTACCGACGGGCGGAATCTGTACAAATACGGGAGCAGCGCATAATATCGGAATCAGCGGAATCCTCGCCGCGAACGCGGCTGACGTCGACGACGCGGAGGACAGCGACGGCGAGATCAGCAAGATTGACTTCCGAGGTGTTAATCTGCGCTCGAAGAAGAAACGCGAGGTGTCGAACAGCCAGAATGGCGACAAGATCGGTGACGGGGACGCGAATGGCGATGGCGGCGCGTGCTGCGACGATAATTCGCAGCATCAGCCCGAGAGACCTATGTCGTGGGAAGGAGAACTGTCAGATCAAGAAATGTCTTCCAATACAATCACCAATCAGGATCATAATGAGGAAACGTCTATGGAGGGGGTTCAGGTATGCAGCACCAGTCCTGGACCTATGGAGCAGAAATTTCCAATTAAATCAGAGCCGGATTTTCGATCCAGCTCGGGTTTCACGATAGGATCGTTTCATGATACCGGCCTGTCCATGACACACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAATCTTGAACAGACTCAACAGAGCGACTTGCCGCTTCTCGTAGGCAAGCTTCTCGGCGGATACAACAATTCAACACCTAATCACAGTCCTGTTCTCAATCCGCGACATCATTTAACTAAGCACAGTCATACCAGATCCCAGGTGCCGTCGCCAGACTCCGCTATTCATTCCGCATACAGCGTCTTCAGTTCGCCGACGCAGAGTCCTCACGCGGCGCGACACTCCGCTCTAGGAGCGGGCAGTCCGATACCGTCCTCGTCGTTATCCTTGTCCCGGCATAGTTTCAATAACTCAACCTCCTCCCTGTCGCTATCGCTGTCGCATTCACTTTCGAGAAACAACTCCGACGCTTCCAGCAGCTGCTACAGCTACGGCTCACTCAGTCCGCCCACGCATTCACCCGTTCAACAACCGAGACATCCGCATTCGCATTCGCAGCATCACCAGCATCAGGTGACGCAAAGTAGTCCGCTGCATCTGCCAGCTTCGTCCGCCGTTGCCGCGCATCATTATTCATCTTCTTCCGTGCCAGGCTCGGAACTGTCTCCGGACGGTCATCCCGTCACGGAGGATCAGGAAGACTGCAGAATACCCTCGGCGTCGTCAGGCATTTCTACTAGGCAGCAACTAATCAACAGTCCCTGTCCGATTTGCGGCGACAAGATAAGCGGTTTCCATTATGGAATCTTCTCATGCGAGTCATGTAAGGGATTCTTTAAGCGCACCGTCCAGAATCGTAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCTGGTTACCGTAGCTACAAGGAAGAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATCAGAGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAGTGTACGTACACTTTACCGGCGAATCTTGTTGGTAGTTCTGCCGGTGGTATGGCCAACGAAAAACTGACGGTAGCGGGTAACTGCAGTCCGGCGCCAACCGGAAGCGAACACCATTACTCCGCTAGATATCACTCGAATCATTCGCACAAGATGCAAGTGGTGCCTCAACTCTTGCAAGATATCATGGATGTGGAGCATCTCTGGCATTACAACGACAACGAACGAATAAGCGGCAGTCGCGGATTACCCGGGAATACGAGGAACATCGTTACTGGTGAAAACATGTCGCTCGGCGGATCTGGCGGTGCCTCGGCGTCCAGCGGCATCGAGACTGGTATTGGCGGCGGAAATAACGGAAGCGCGGTGAAATGTTCGTCAAATGATTCCATCAACGCCGATAGCAACAACATACAGGGAGAATCGGTTAGCCCCGTCGTCTCGTCTTCCACAGGGGCCGATCAACGTTCCACAAATGGCAATACTAACAATAATAACGGCAATTCTCAAGGCGCCAGTAATTCCAACGGCAATCCAACGCAACATCCGGATTTTCTGTCTAATCTGTGCAACATTGCGGATCATCGGCTGTACAAAATTGTTAAATGGTGCAAGAGTCTGCCGTTGTTTAAGAATATCTCGATCGATGATCAAACCTGCTTGTTAATCAACTCCTGGTGCGAACTATTACTCTTCTCATGTTGCTTTCGCAGCATGAGCACTCCCGGTGAGATAAGAGTGTCTCTTGGCAAGTCGATTACTCTGGAACAAGCAAAGCAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTCACTAATAATCTGCGAAGGCTGCGAGTAGACCAGTATGAATATGTTGCGATGAAGGTGATCGTGCTGCTAACGTCCGATACGAGCGAACTAAAAGAGCCAGAAAAAGTCAGAGCTTCTCAAGAGAAAGCCCTTCAAGCGCTGCAGCAATACACAATCGCAAGGTATCCGGAGATGCCTGCCAAATTCGGTGAACTATTATTGAGAATTCCAGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCGAAACGCGCCGAGGGAGAAGGCAGCTCGTTCAACCTTTTAATGGAATTGTTAAGAGGAGATCACTGA
Protein Sequence
MSDQNGPNEGPPGPGPGSDSSGWWQSTTQTWKSSATATSSTSSISTSIAGSACVSVSCVASSSSTTSSSTSTNSSATCCLSSCIGVSCTMSPSRSTESGKNVSVTTINVPNQEMHDGKGMCKYLGRQNGVTVSVVSTSVLGGANAVPTGGICTNTGAAHNIGISGILAANAADVDDAEDSDGEISKIDFRGVNLRSKKKREVSNSQNGDKIGDGDANGDGGACCDDNSQHQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSSGFTIGSFHDTGLSMTHNXXXXXXXXXXXXXXXENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVTQSSPLHLPASSAVAAHHYSSSSVPGSELSPDGHPVTEDQEDCRIPSASSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCLVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSSAGGMANEKLTVAGNCSPAPTGSEHHYSARYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNERISGSRGLPGNTRNIVTGENMSLGGSGGASASSGIETGIGGGNNGSAVKCSSNDSINADSNNIQGESVSPVVSSSTGADQRSTNGNTNNNNGNSQGASNSNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQTCLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQAKQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_01267641;
80% Identity
iTF_01267641;