Pcub001093.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- Rel
- Assembly
- GCA_014825685.1
- Location
- QVOA01018168.1:16339-21280[-]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-42 1.5e-38 132.9 1.3 1 168 85 275 85 276 0.91
Sequence Information
- Coding Sequence
- ATGCCGGATGCGTACGAGAACTTTGACATGGCGATACGAAGCATGGTGACAGCCAGCGTTATCGCGGATGACGAGGACCCGTACCTCCCGTCCAACGATGTAGTTAATATGAATACTCTAAGCCCATATAGCGGATCTCAAGGAAACATGAGCGCTTCATCTCCAACATCAACTTCTCTGTCACCAGTATACTTTTCTCCAGAGGAATATGTTACTAATTTAAACAATATCACAGTACTTGGCGAACCGTATATCAAGATTTTGGTACAGCCAATAGAAAAGTTCAGATTCCGATATAAATCTGAGATGGTAGGAACACATGGAAGCCTGACGGGTGTTTCGTCTCTGACAGGTAGACGAAACAGGTGTGTGCCTACAGTGCAGTTATGTAATTATATGGACCAAGCAATAATACGATGTACATTAGTTACGTCTGACGAGGACAACAGGATAATACATGCTCACAGATTAGTAAGACGGGAAAATAACGACGATGTTGATGATCCACACGAAGTACCAGTTTCGCAATATAACAACTATACAGCCGAATTCACGAACATGGGCATAATACACACTGCGAAAAAACACATTAAGGACGAAATAGTTCGGAAGCTGCGTGCGAAGCTTTTGGAAGAACGTAGACGTTCTAACAGAGACGCTACTCTCAGCTTGTGCGATGACGCAAAGATTAAACACAATGCGGAACACTATCAGAGGACTATGAATTTAAATAGCGTAGTCCTCTGTTTTCAAGCATTCATAAAAGATGAATTTGACATCATGAGACCGATCACGAAACCAGTTTACAGCCATCCAATCAATAATCTGAAAAGCGCGTTAACTGGAGAATTAAAAATATGTAGAATTGATAAATACACTAGCAGCTGCGAAGGTGGAGAAGAAGTGTTCATATTTGTAGAAAAAGTTGCTAAAAAAAATATAAAAATCAGAGTTTTTGAAGTGGATGAAGAAACTTCAATTGAAGTTTGGAGTGATTACGCTCGTTTTTCAGAACTTGATGTTCATCATCAGTATGCTATGGTTTTTCGAACTCCACCCTACAGAGATCTGACGATCACGTCTCCGAAAGACGTCTTTATTCAACTGGAACGTCCTTCGGATTTACAGTGTTCGAACGCAATCAAGTTCGTATACAAACCTAGTGATCGCATGATGGGTAGGAAGAGAACGAGAGTCTCCGATTCAAATAGTGAAGAATTGGCACGTATGGCAATTAGTAATCAGAATTCACCGTTGATGACCACTGCGGAAACGGCATTACCGAATACAATATCAAATGCACCCAGTGTATCTTCAAATAACAGCGAACAAAATAGTGATTTATCTAAAGACTTGAGTGAGATGTTACAAGGAAGTTGTCCTTCTAATGAGTTTCGAGAGTTTCTCGACAACATGAGCTCAGGCGACCTTTTGATACCCTATGCGGACTGCCTATTTCAAAGCGAAAATCTAACTTGCGACGGAGCACGCAGTAAAACACCAAATGTCACTTACGAGGACGAAGATAAACTATTCGCTTATAAAATTCTGTGGAATGTGATGATAGATATTAAGAAAAAACCAGGAAAAACAAAGGATATTATAACCAATTTATTCAAAGACCGAACAACGTACGGAGATACGCCTCTACACTGTGCCCTAAGATATGGACAAAAAGACACCGCAAAGAACATCCTGAAGCTCATGAGCGTTTTGAAGTCAGACGCTGCCGAATTGATAAACATACAAAACAGTTCTGGAAAGACTCCGTTGCATTATGCCGTTACGCAAATTCATCCGGAAATTACGAAAGCGTTGCTGATGCTTGGCGCTGATCCGAATATAGCAGATCATTGTGGACAAATGCCGCTACACAAAGCTGTAAAGTGTTCAGAAGCGAGAACAAACATTGATATTTTGTTGAATGAAAAAACAATTAACATTGAAGCGAACACGGATTTAGGATGGACACCGTTGCAGTTAGCCGCTCAAGCGGGTTCGTGTCACGCAGTGCAGGCTCTCGTTAAAGCGGGCGCAGATGTCAACAGTACTGATATGTCTTATGGAAGAACTGCTTTGCACGTGGCGGTTGAAGGTGGTCACAAGGACATAGTTAAATTCCTAGTGGAAAACACCAAGATAAACGTGAACAAGCCGAACTTAAGCGGTAACACAGCGTTGCACACTGCCGTGGTTACGCCAGGATCGAAAGCTAAACAAATCTGTGCTCTTCTACTGAAACACGGCGCCGATCCACATATAAAGAATTACAATCACGAACCGAAAGCACCAAACGTCGAAGAAGACGAAGAGAATATAGAAACAAAAATAAAAATTGAACAAGATTTAGATGATGAAAACACAGAAGAACATAGCGGACAGTCGTCGTTCGACTTGGCATCGAACAAACCAGATATCTTGCAGCTCGTTTCTGAAAGTAATGCATTCTTAAAAGAAACGGTGCAATGTAAAGAAGAAGATATAAATGACACAGAAAAAGTTTGGATGGATGTGGAACAAGAAGTGCAGTTAGCAAACATATTGGACAAGACAGGAGGATGGAAAAAGTTGGTCCGACATTTTAACTTTGATGACTTAAGAAACACTTTTGAACAGAGCTCTATCAGTCCGTCGATGCTTCTTTTGAATTATATTGCTATACAAACCAATACTCCTCTCAGCGAACTTCGTTTAATATTGGAAATTGTTGGCGAAGATGATGCTGCTGTATTCATGACACAACTTTTACAGGAAAATTAA
- Protein Sequence
- MPDAYENFDMAIRSMVTASVIADDEDPYLPSNDVVNMNTLSPYSGSQGNMSASSPTSTSLSPVYFSPEEYVTNLNNITVLGEPYIKILVQPIEKFRFRYKSEMVGTHGSLTGVSSLTGRRNRCVPTVQLCNYMDQAIIRCTLVTSDEDNRIIHAHRLVRRENNDDVDDPHEVPVSQYNNYTAEFTNMGIIHTAKKHIKDEIVRKLRAKLLEERRRSNRDATLSLCDDAKIKHNAEHYQRTMNLNSVVLCFQAFIKDEFDIMRPITKPVYSHPINNLKSALTGELKICRIDKYTSSCEGGEEVFIFVEKVAKKNIKIRVFEVDEETSIEVWSDYARFSELDVHHQYAMVFRTPPYRDLTITSPKDVFIQLERPSDLQCSNAIKFVYKPSDRMMGRKRTRVSDSNSEELARMAISNQNSPLMTTAETALPNTISNAPSVSSNNSEQNSDLSKDLSEMLQGSCPSNEFREFLDNMSSGDLLIPYADCLFQSENLTCDGARSKTPNVTYEDEDKLFAYKILWNVMIDIKKKPGKTKDIITNLFKDRTTYGDTPLHCALRYGQKDTAKNILKLMSVLKSDAAELINIQNSSGKTPLHYAVTQIHPEITKALLMLGADPNIADHCGQMPLHKAVKCSEARTNIDILLNEKTINIEANTDLGWTPLQLAAQAGSCHAVQALVKAGADVNSTDMSYGRTALHVAVEGGHKDIVKFLVENTKINVNKPNLSGNTALHTAVVTPGSKAKQICALLLKHGADPHIKNYNHEPKAPNVEEDEENIETKIKIEQDLDDENTEEHSGQSSFDLASNKPDILQLVSESNAFLKETVQCKEEDINDTEKVWMDVEQEVQLANILDKTGGWKKLVRHFNFDDLRNTFEQSSISPSMLLLNYIAIQTNTPLSELRLILEIVGEDDAAVFMTQLLQEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01268045;
- 90% Identity
- iTF_01269571;
- 80% Identity
- -