Pcoc011004.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- retn
- Assembly
- GCA_014839585.1
- Location
- QVOB01009364.1:170-4086[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.3e-18 3.1e-14 53.5 0.1 29 89 4 62 1 62 0.93 2 2 0.87 2.9e+03 -0.9 0.1 17 41 138 163 132 183 0.74
Sequence Information
- Coding Sequence
- ATGGCGAAATCTGTTCTGGATCTATTTGAACTTTACAAACTGGTCATACAACGAGGCGGACTCGTCGAAGTAATCAACAAGAAGCTTTGGCAGGAAATCATCAAGGGTCTGCGATTGCCGGCAAGCATCACATCCGCCGCGTTTACTCTACGAACTCAGTACATGAAATACCTGTATCCATACGAACAGACGCACGAGAGACTGTCAACCAGCGGTCAGCTTCAGCAAGCAATTGAGACAAACAAACGTGAAAGTCGTCAAAAACCCAGCCCCCAAATGATGGGGGTCACTTATTCATCTAATAGAGACACCCAGGCTCCGTTGGGAATGAATACCCTCTCGCTCGGCTTAACGGGCCCGATAACTCCAAGCGGATCGCAACAGACCCGTCCGCACATCTTGATGCCCAACGGTAGTCAACATCCGCAGCATTTGCCACAAATGCCAAATGGTATGCTTATGCTTTATATGTTACAACGGGAAATACTTTTAGAGTACGTGATGAAAATGATCAACGAACAACGAAGAAATTTGCCACAAGATAACCAATCACAAACGTTAGAACCCTATGGGTTGGCACGGATGATGTGGATGTGCCAACAAAACATGTATCCTGGAAGACCGCCCACTCCAGAACCTTCTCCACCTACTCCAGAACCGCCCACTCCAGAACCGCAAGCTCTCGATCTAGCAAGATCGGACTCAGATCGTTCCAGTAGACCTGTCAGTCCACGAAATGAGCCATCCACGTCAAGGAGAGAAAATCGTGAAAGTACGGATCAGCTACCAACATCAAATTGTAAAAGAAAATCTTATTCTGATGATGAAGAACCGCTGGAGAATAACAGAAAAGGCAAAGCTATGAAGACTCAAATACCCAGGACACAAACATTTACTATTCGCGAATTTCGACCTGATGCATTAGAAGTCGAAATAAAACTCGATAATACTGTATATCAAGGCACTGTACCAGTAAAACATGAAGAAAGAAATTCGGAAAGTGATGCCGATGACGCCAGTGGGAGACAGTAA
- Protein Sequence
- MAKSVLDLFELYKLVIQRGGLVEVINKKLWQEIIKGLRLPASITSAAFTLRTQYMKYLYPYEQTHERLSTSGQLQQAIETNKRESRQKPSPQMMGVTYSSNRDTQAPLGMNTLSLGLTGPITPSGSQQTRPHILMPNGSQHPQHLPQMPNGMLMLYMLQREILLEYVMKMINEQRRNLPQDNQSQTLEPYGLARMMWMCQQNMYPGRPPTPEPSPPTPEPPTPEPQALDLARSDSDRSSRPVSPRNEPSTSRRENRESTDQLPTSNCKRKSYSDDEEPLENNRKGKAMKTQIPRTQTFTIREFRPDALEVEIKLDNTVYQGTVPVKHEERNSESDADDASGRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01270985; iTF_01268059; iTF_01267335;
- 90% Identity
- iTF_01268059;
- 80% Identity
- -