Phyg019909.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055404.1:49921367-49935547[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.46 6.5e+03 -1.0 0.0 26 44 9 27 5 31 0.80 2 3 5.3e-09 7.5e-05 24.4 0.5 24 45 33 54 27 59 0.90 3 3 0.0078 1.1e+02 4.6 0.1 26 48 148 170 134 172 0.87
Sequence Information
- Coding Sequence
- ATGGATGACGGCCAGTCACGGTTCGTTTGTCCACAATGTggagtaaaatataaaaagataAGTGGCTTACGTGGACATATGAAAGAATGTGGTCGAGGTGCCCAATGTCCCATATGCCCGAAAGTGGTGACCCAACGTAGAAATTTGCGTAAGCATATGGAAAAGCATACAAGGGAAGGTTTGGTTAACAGTATTAAAGATGATGATAAATCATTTGCAAAACCATGGAgATCACCGAATCTGGCTCTACCCGGCATAaccgaaaatattgaaagaattTTGAGTCGGGAACACTTAGCTTGGTTCATGCAAAAAGCTAAAGAAGTTTCTATATTTAATCGCACCAGACTTAGTCTGGATGCCGTCAGTCAAGAGGCACCTCAATTGATAAATCCAACAGCAGCCATAACAAACAATCGACAATTGCGACCATTCGCCTTCAAGTGTCCTTTATGTTCCTTAGTTTATCGAACGCAAGCGTTTCTGAATGAACATATGAGAAAGGAGCATTCTGTTCTGATTTAA
- Protein Sequence
- MDDGQSRFVCPQCGVKYKKISGLRGHMKECGRGAQCPICPKVVTQRRNLRKHMEKHTREGLVNSIKDDDKSFAKPWRSPNLALPGITENIERILSREHLAWFMQKAKEVSIFNRTRLSLDAVSQEAPQLINPTAAITNNRQLRPFAFKCPLCSLVYRTQAFLNEHMRKEHSVLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01266393;
- 90% Identity
- iTF_01266393;
- 80% Identity
- iTF_01266393;