Phyg049077.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- WJQU01002913.1:5022-11838[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.31 4.4e+03 -0.5 0.1 23 50 71 98 45 100 0.83 2 9 0.32 4.5e+03 -0.5 0.0 26 44 190 208 184 212 0.73 3 9 0.0066 93 4.9 0.1 26 44 293 311 290 318 0.78 4 9 0.063 9e+02 1.7 0.0 23 44 388 409 381 413 0.89 5 9 9.6e-06 0.14 13.9 0.1 20 46 413 439 407 446 0.87 6 9 0.16 2.3e+03 0.4 0.0 20 45 523 548 516 557 0.79 7 9 0.001 14 7.5 0.0 21 46 580 605 568 611 0.88 8 9 0.59 8.3e+03 -1.4 0.0 21 44 636 659 626 664 0.79 9 9 0.0045 63 5.4 0.0 21 45 664 688 657 692 0.88
Sequence Information
- Coding Sequence
- ATGGAAACTGATCCTCTGAGTCCGTCAACTGCTTTCGATTCACTCGAAGTACAACCGAAAGAGCAGCAAGTATCTGCGAAAACGAAGAGTGAaggaaatgttttcaaaaattcatcggATCCACTGGATTTCATTTGTTTTGTGTGTCACAATGAATTCGACGATGTGGCCAAATTGCATGTTCACATGTCGATGAAACACAAGGGTATCAAGCCGTATCGATGCGAGTATTGTGGAAAAGCATTCGCAACTACGAAGAGTGTGGGTGTTCACTTGCAGGTACATCATTTCGGTCGCAGTGATAAATACCTTTGCTTGCCCTGCAAGTCATATTTTCGTGGAGCCGACGATTTGTCCAATCATAATGCTCTGGTCCATAAGAAGAGCTATCAATGCGGTAAATGCTGTAAATGTTTTAGTCACATGAGTGAACTGACAGCACATGAACGGATGCATTCATTCAATAAGCCATTTCATTGTGAACGATGCGACGAATCATTTATGTCCCAATCGAGCTTATCATTGCACGTCCATCGAGTTCATAAGTTTAGCGTAGATCGACAGATTCATTGTCCGTTATGTGACTATTCTTTTTCCAAGCAAAGTGATTTGAATGCTCATCTTTACGTACACGATGAAGAGACTTTGGAGTGTCCCGACTGTGGTGAATTGTTTGACAACTTGGAAGTCTTCACTGAACATATGGAGATACATGAGAAGAAGGTGGAAACTACGGGAAATGCAATTGCCGATTTGGAAGATGCTGCAGAACTTGCGGAAGAATCTGACGATTTTATGGATGACACACCGATGGATGATGGTTTTGATGATAACAACGAAAGTAATCTAACGAAAATGGGTGTCATTTTGTCCTACACATGTCCAATATGTTTCAAAGTTTACAGCGACGTCGCTAAATTTAATTCCCATTGTGAGGAGCATAACGCATCCACCGATGGTGGTCCGGTTACAAAAACTTTGTCAAAACCCACAGAAGAAATGCTCAAACCGAACCGTCCTAAAACTAAGCGGACAGCAGTTTCACTGAAATGGCAGgaaaatgacaacaaaattcGTAATTTCTCTTGCGAAAAGTGCAATCGATCTTTCACAATGGCTAGTACGTTAAGTCTACATTTAAGGCGAACTCACTTAGGCATCAAGCCGTACAAATGCCAAGTTTGCGAGTGGACTTTCGCTCAATCTAGTGACTTGACCAAACATATGCGAAAACACACAGGTGAAAAGCCATATTCTTGCACGACGTGTGGGGCACGATTTTCACAAAAGCGCAACTTACGCAACCACATGAAGATGCACACCGACGAGCCAAGCATTTGTAAATATTGCCACAAGAAGTTTTTGATAGACACCAGTTTGGTGCAACATCTGAAGAAGCATGAGCCCAATGTTACGAATTGTACGGTGTGTAAGATTCCGTTCTCCAATCAGGACTTTCTGGACAAGCATTCCAGGCGGTGTATGACGAAAGACAAACATCAATGTACGCAATGTGATAAATCATTTGCTAAGGCAGGCgatttggtgaaacataatcgTAAGCACACAGGTGAACGGCCATTTGTGTGTACATTGTGtaacaaaacattttcacatcCGACCAGTTTACGTAATCACGGCGCTGTGCACACAAAGTTAAAGCCTTTCATTTGTTCGTATTGTGGACAAGCTTTCTCGTTTCATGGCAATTTAAAAGTTCATTTGGTCAGTCATTCAGGAGAGAAGCCTTTTTCGTGTCACATATGTGGAAAATCGTTCGCAAGGTCAGCCAATCTGAAAGAGCATGTCAAAATTCATACGgGAGAGAAAAATTACAAGTGTGCTGTGTGTGAGAAATCATTTACGAATTCGTCAACTTTCTCAAAGCATAAAAAAATCCACAGCGGCGAGAAGCCACACCACTGCTCCTTCTGTGACAAACGTTTTTCACAACATGCACACTTGGTGAAGCATACCAGAATTCATACAAACGAAAAACCCTATGGTTGTGATGTGTGCAACAAATATTTTCGTCGATCGGATACATTAGCTAATCACCTTCGGACCCACTTGAAGGACGACCGGAATAATTATCACAAGTTATCCACCGCAGATCCGTCCGATCAATCAACGAAATTACAAGTGCCTGTTCCTACTCTCGATGTGCAATTAATACAGCAATCCAGCAACACTATCGAAGATGTTCCTCAAATAATTTATACCATTACAACACCCGCCAATGTGACCGGAGTGACTGCCGATCAAATTAACATGGAACTATTGAATGATGCTCAAACAAATCCTCATTTTATTATAACGTCGCTGTAA
- Protein Sequence
- METDPLSPSTAFDSLEVQPKEQQVSAKTKSEGNVFKNSSDPLDFICFVCHNEFDDVAKLHVHMSMKHKGIKPYRCEYCGKAFATTKSVGVHLQVHHFGRSDKYLCLPCKSYFRGADDLSNHNALVHKKSYQCGKCCKCFSHMSELTAHERMHSFNKPFHCERCDESFMSQSSLSLHVHRVHKFSVDRQIHCPLCDYSFSKQSDLNAHLYVHDEETLECPDCGELFDNLEVFTEHMEIHEKKVETTGNAIADLEDAAELAEESDDFMDDTPMDDGFDDNNESNLTKMGVILSYTCPICFKVYSDVAKFNSHCEEHNASTDGGPVTKTLSKPTEEMLKPNRPKTKRTAVSLKWQENDNKIRNFSCEKCNRSFTMASTLSLHLRRTHLGIKPYKCQVCEWTFAQSSDLTKHMRKHTGEKPYSCTTCGARFSQKRNLRNHMKMHTDEPSICKYCHKKFLIDTSLVQHLKKHEPNVTNCTVCKIPFSNQDFLDKHSRRCMTKDKHQCTQCDKSFAKAGDLVKHNRKHTGERPFVCTLCNKTFSHPTSLRNHGAVHTKLKPFICSYCGQAFSFHGNLKVHLVSHSGEKPFSCHICGKSFARSANLKEHVKIHTGEKNYKCAVCEKSFTNSSTFSKHKKIHSGEKPHHCSFCDKRFSQHAHLVKHTRIHTNEKPYGCDVCNKYFRRSDTLANHLRTHLKDDRNNYHKLSTADPSDQSTKLQVPVPTLDVQLIQQSSNTIEDVPQIIYTITTPANVTGVTADQINMELLNDAQTNPHFIITSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01266154;
- 90% Identity
- iTF_01266154;
- 80% Identity
- iTF_01266154;