Phyg002174.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055403.1:20392245-20415133[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.75 1.1e+04 -1.7 0.2 16 31 67 82 60 95 0.79 2 9 3.8e-05 0.54 12.0 1.0 17 52 243 278 237 280 0.81 3 9 0.054 7.7e+02 1.9 0.0 21 48 275 302 271 306 0.85 4 9 0.00098 14 7.5 0.0 21 47 303 329 290 334 0.85 5 9 0.004 56 5.6 0.0 22 49 332 359 329 362 0.87 6 9 0.0021 30 6.5 0.0 21 49 359 387 355 390 0.86 7 9 0.0021 30 6.4 0.1 21 52 387 418 383 420 0.87 8 9 0.0017 25 6.7 0.0 21 46 443 468 427 471 0.88 9 9 7.9e-05 1.1 11.0 1.2 22 46 472 496 469 504 0.87
Sequence Information
- Coding Sequence
- ATGAGTCAAAAACAAGCTCCTATTGGCCCTTCCCGAAATAACAATGAAGGCGACTATTCCTGGTTGAATCAAATGGAGGGAGACTTGATCGACGTTTTTGATTATGTCGATCCAGGATTGCAATCGTTGCTTGACAAAGGAGTAGACCATACTCTGAAGAAAATTGACAATCAGATTAAACAGCCAGACACTAATGTAAACTCTCAGTCAGGTAGAGAACAAGACGCATATCAACCAACATGTAGAGGTTGTTGTGAACTTCAAAATTCTCTAGTCTTTCAACTTGAACAGCATAACAAGTTGATTGCAGAACTGCAAAATGAAGTGAGGAGCCTATGGGCGATTCTTCGACAATGTTCCATGGTTGAGAAACCATCAATAAGACAAGATGGCGCGGGTGAGCATTCGAGAAATGCAGAACTTTGTGTTACTGAAGCAGCGACAGTTCTCACATCGGCAGAGGAGATCTCCGAGAAACGTTTACCTCAAGGCGAGGAATGCAACGTAACAGCGGAAGTATCCGAAGACACTTTACTCAATGCTGAACGTCAGGAACAATCAAAGGATCTGCAGTGTCAAGATCAAGCAAAGGGTTCGGGTTGCCACAACAGTTCCACAGAATTGATGGCTGTTAATTTGCAGCAAAGTCGTTGGAACGGTAGATGGGCCGGTGTCATTCGCGAATGTCGAGTCTTAATATCGAAGGACGCCCAAGTGGATCGTAGACGTAAGCAAGACGGAGAAAAGCGCTACAAATGTACGGTCTGCCAAAAGGCATTCAGCCAATCAAGCCATTTGAGAAGACATTTGCGCATTCATTCGGGAGAAAAGCCTTACGAATGTGAGGTCTGCCAAAAGGCATTCGGCAATTCAGGCGTTTTGAAAATACATTTGCGCATTCATTCGGGAGAAAAGCCTTACGAATGTAAGGTTTGCCAAAAGGCATTCGGCGATTCAGGCCATTTGAAAAGGCATTTGCGCATTCATTTGGGAGAAAAGCCTTACGAATGTGAGGTTTGCCAAAAGGCATTCGTCGATTCAGGCATTTTGAAAAGACATTTGCGCATTCATTCGGGAGAAAAGCCTTACGAATGTGAGGTCTGCCAAAAGGCATTCGTCGATTCAGGCGTTTTGAAAAGACATTTGCGCATTCATTCGGGAGAAAAGCCTTACGAATGTGAGGTTTGCCAAAAGGCATTCGTCGATTCAGGCATTTTGAAAAGACATTTGCGCATTCATTCGGGAAAAAAGCCTTACGAATGTGAGGTCTGCCAAAAGGCATTCGGCAATTCAGGCGTTTTGAAAATACATTTGCGCATTCATTCGGGAGAAAAGCCTTACGAATGTGAGGTTTGCCAAAAGGCATTCGGCGATTCAGGCCATTTGAAAAGGCATTTGCGCATTCATTTGGGAGAAAAGCCTCACGAATGTAACATTTGCCAAAAGGCATTCAGACGATCAAGCCATTTGAGAACACATTTGCGCATTCATTTGGATTTACGACCACATTTGACGAGCACACAGAAAAAGCTCAAATCTCGGATCAACATTGTCCGGAAATTGACTGGTTCGTCCCAAGCATTAATCATGTCAATCGCTGATTATTGCTCGCCAGTGTGGATAAACAGCTGCTACGTAAAAATGGTAGACACTCAAATAAACGTCGCTCTACGTCTCATCTGTGGCTCAGTTCAATCGACGGAATGGCTCAATGTATTGAGCAACGTCACTCCGGTCGAAATTTTGAGACAAGAAGCTGCATTGCGAGAATGCGAAAAGATACGGTTGGACGACGAAATTGCCATACACAAAGACTTGGAGTCCACGCCGATCTCAGTACGATCAAAATCACGGAAACCGTTCTGGCGCTTCTTCAGAGAGTCAACGAAGATGGAGAACTGCAAAGATCGATGGAGAAAATGGTGGCAAATTGCTACTGTGCACAATAAACATCTCGTCGAAGATCCGATTGTTAAGGTAAATGGAATCGAATTGCCGCGTCGTACTTGGGTGAGAGTTAACAGAATCCGAATGGGACAAAGATGTGTGGCATTTCTACTACACATGGAACATTGTCGAATCTCATTTGTGTCAATGTGGGGAGGAACAAACGATGGAACAGACGGAACGATCAATCGATTCGAAGGTGAGCTGAACGAAATTCACGATTTAACCGACGGAGCTTGA
- Protein Sequence
- MSQKQAPIGPSRNNNEGDYSWLNQMEGDLIDVFDYVDPGLQSLLDKGVDHTLKKIDNQIKQPDTNVNSQSGREQDAYQPTCRGCCELQNSLVFQLEQHNKLIAELQNEVRSLWAILRQCSMVEKPSIRQDGAGEHSRNAELCVTEAATVLTSAEEISEKRLPQGEECNVTAEVSEDTLLNAERQEQSKDLQCQDQAKGSGCHNSSTELMAVNLQQSRWNGRWAGVIRECRVLISKDAQVDRRRKQDGEKRYKCTVCQKAFSQSSHLRRHLRIHSGEKPYECEVCQKAFGNSGVLKIHLRIHSGEKPYECKVCQKAFGDSGHLKRHLRIHLGEKPYECEVCQKAFVDSGILKRHLRIHSGEKPYECEVCQKAFVDSGVLKRHLRIHSGEKPYECEVCQKAFVDSGILKRHLRIHSGKKPYECEVCQKAFGNSGVLKIHLRIHSGEKPYECEVCQKAFGDSGHLKRHLRIHLGEKPHECNICQKAFRRSSHLRTHLRIHLDLRPHLTSTQKKLKSRINIVRKLTGSSQALIMSIADYCSPVWINSCYVKMVDTQINVALRLICGSVQSTEWLNVLSNVTPVEILRQEAALRECEKIRLDDEIAIHKDLESTPISVRSKSRKPFWRFFRESTKMENCKDRWRKWWQIATVHNKHLVEDPIVKVNGIELPRRTWVRVNRIRMGQRCVAFLLHMEHCRISFVSMWGGTNDGTDGTINRFEGELNEIHDLTDGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01266172;
- 90% Identity
- iTF_01266172;
- 80% Identity
- iTF_01266172;