Phyg004492.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055403.1:52066957-52074083[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00046 0.056 15.5 3.4 1 23 303 325 303 325 0.98 2 11 0.0029 0.35 13.0 9.5 1 23 331 353 331 353 0.96 3 11 0.00017 0.021 16.8 6.4 1 23 359 381 359 381 0.98 4 11 0.001 0.12 14.4 1.6 1 23 387 409 387 409 0.95 5 11 0.00011 0.014 17.4 0.6 1 23 415 437 415 437 0.96 6 11 2.3e-05 0.0029 19.6 0.1 1 23 443 465 443 465 0.98 7 11 0.0004 0.048 15.7 0.8 1 23 470 493 470 493 0.95 8 11 0.00022 0.027 16.5 0.2 1 23 499 522 499 522 0.95 9 11 7.5e-05 0.0092 18.0 0.1 1 23 621 643 621 643 0.97 10 11 0.0037 0.46 12.6 6.6 1 23 754 776 754 776 0.96 11 11 0.013 1.5 11.0 5.2 5 23 789 807 781 807 0.92
Sequence Information
- Coding Sequence
- ATGTTATCGTCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCATCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCATCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCATCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCGTCTACGAGACGATGTCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCATCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCGTCTACGAGACGATGTTATCGTCTACGAGACGATATCATCGTCcacgagacgatattatcTCCAATCAGATCAATCTAATCATTCTCTAGCTGCAAATGGAATTCTGGATACCAAAACTGTTCTGACAACTGGTGGAAAGACGTCATTTGTTAGCAGCCCCATTGGCACATTGCAGTTGACTGTAGAAGAATGTAATGAAATCATGATGAAAAGGGCTGTTGCTGCGGCAGCTCAACAACAGAATCACACTACAATTACAACAACGGATGGACATCACACAGATTATCTGATCCGTGAAGGCATTTCGGTGCAAGTGCAAAAAGTAATACAAGGTCTGGAAGAGGCTGATGATTCGCAGCAAGAAACTCAATGTAAATTGGAGCCAAACATGGATATTGACACGAAGGAGGAAGTCTTGCATCAAGTGGAAGATGATCAAGAACATGAACTTGAACTAGAGCTTGACCAGGATCATGAAATGGAAAGTAAACATGATCCAGATGCTCCACCAAAGGAACGACCGTATTCGTGCGATGAATGCGGTAAATCGTTTTTGTTAAAACACCATTTGACCACCCATGCTCGCGTGCATACGGGTGAACGACCCCATGTCTGTGTGCATTGTGGAAAGAGTTTCGCTCATAAGCATTGCCTGAATACGCATTTATTACTTCATTCGACCGATCGCCCCTATCAATGTAGCGAGTGCAAGAAATCGTTTACTCTAAAGCATCATTTGTTGACTCATTCACGAGTACACAGCCGAGATCGGCCATTCGTTTGTCAGGAATGTGGACGAGCTTTTCCACTAAAACGACACTTAGTAACACACAGTAAATTTCATGCCGGCGAACGTCCATTCGTTTGTGAAGAGTGCGGAGAAAGTTTTGCTCAAGAAAATCATTTGGTGATGCACTCCAGATTCCACGGATCTGTTAATCCATTTGTATGCGGAGATTGTGGTGCAACGTTTCCcagaaaatttcaattagtAAATCATGGTCGAATACATGGACGTGTACCACACGCCTGTACCGTTTGTGGTAAAGAATTCTTGCAGAAACGAACTTTAGTTGCACATATGCGATTGATGCATACTGGAGACCATGCGTATCCATGCACGGCCTGTGGAGAAGGGTTCCGTACCAAGGCTGAATTAAATCAGCACAACAGACAAACTCATGGAGGAGTTAATCCAAACGCGGCGAACACTACAATTGTAGTCGCATCGTCTCAACTAcagcaacagcaacaacaacaacagcagcaaCAGATTCAAGTGGTTCATACCACCTCTGAGCCACAACACATTGTGCAGCATGTGCAACATCAGACACAACaaaatcaacatcaacaacagcaacagcaacaacaaaatcatcatcatcatcaacaacAAACGGTAACTGTTGTCAGCAGTCAAGCGAATAACGGCATCGTGACTATTAGCACACCAGAAACATCACCGAGGCCACAATACGCTTGCCGCGAATGCGGTCAAGCTTTTAATAGCAGAGAAGCGTTAGCGCTTCATTTACGATTGCATACTGGCGACAAGAGTCTAATGACCGATTTGTGCGCCCTGACAGCAGCCTTGCCCGGTCACTTTTTAAACACATCCAATTTACAACAAGGTACAGTTCTTACCACCAATCATTCGGTCGTCCAACAGACGCCTGTTCCGGTTCAAATTATATCCACTGGCCAAGTGATTCAGCAGGGCAACATTGTACAAAATTCACCGCCACAGGCGCAAATTCAAGTACAGCAagtacaacaacaacaacagcagcaacaacaacaacaacaacaacatcagcCTCAACAACAGACAACGATTGTTGTGCCAGTAGCACCACAACAAAAGCCGAAGtcGCACTTCTGTACAAGTTGTGGGAAAGGATTCGCATCGAAACATGGATTATTACAACACCATCGTCGTCATCCGAACGGTGGCTGTACGCTTCGCACGCACGTTTGCGAATGTGGTAAGGCGTTCTTCCAGAAAAATCATTTAATGCTTCATCAGCGTCAACATTTGGAGACGAAACCGGTCATCATACAACAGCAGCAGGTTGTGCAGCAACAGCAACTGCAGAACCAACAACAAGCACAACAACAACAAGCGAATGCAATCGGACGTGAAGTGATGCTTGGAACCACACCGGTCCATGTACAAGTGTTACAGGGCAACACGGCGCAGGTCATTAAATACGAAATAAATATTCCACAAGAAAGCGGACAAGGTATAGAGTGA
- Protein Sequence
- MLSSTRRCYRLRDDVIVYETMLSSTRRCYRLRDDVIVYETMLSSTRRCYRLRDDVIVYETMLSSTRRCYRLRDDVIVYETMSTRRCYRLRDDVIVYETMLSSTRRCYRLRDDVIVYETMLSSTRRCYRLRDDVIVYETISSSTRRYYLQSDQSNHSLAANGILDTKTVLTTGGKTSFVSSPIGTLQLTVEECNEIMMKRAVAAAAQQQNHTTITTTDGHHTDYLIREGISVQVQKVIQGLEEADDSQQETQCKLEPNMDIDTKEEVLHQVEDDQEHELELELDQDHEMESKHDPDAPPKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLNTHLLLHSTDRPYQCSECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRAFPLKRHLVTHSKFHAGERPFVCEECGESFAQENHLVMHSRFHGSVNPFVCGDCGATFPRKFQLVNHGRIHGRVPHACTVCGKEFLQKRTLVAHMRLMHTGDHAYPCTACGEGFRTKAELNQHNRQTHGGVNPNAANTTIVVASSQLQQQQQQQQQQQIQVVHTTSEPQHIVQHVQHQTQQNQHQQQQQQQQNHHHHQQQTVTVVSSQANNGIVTISTPETSPRPQYACRECGQAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLNTSNLQQGTVLTTNHSVVQQTPVPVQIISTGQVIQQGNIVQNSPPQAQIQVQQVQQQQQQQQQQQQQHQPQQQTTIVVPVAPQQKPKSHFCTSCGKGFASKHGLLQHHRRHPNGGCTLRTHVCECGKAFFQKNHLMLHQRQHLETKPVIIQQQQVVQQQQLQNQQQAQQQQANAIGREVMLGTTPVHVQVLQGNTAQVIKYEINIPQESGQGIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245710;
- 90% Identity
- -
- 80% Identity
- -