Bcop007717.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:2040100-2067002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00037 0.016 15.5 3.4 1 23 302 324 302 324 0.98 2 11 0.0024 0.1 12.9 9.5 1 23 330 352 330 352 0.96 3 11 0.00015 0.0063 16.8 6.4 1 23 358 380 358 380 0.98 4 11 0.00085 0.037 14.4 1.6 1 23 386 408 386 408 0.95 5 11 7e-05 0.003 17.8 0.5 1 23 414 436 414 436 0.97 6 11 2e-05 0.00085 19.5 0.1 1 23 442 464 442 464 0.98 7 11 0.00033 0.014 15.7 0.8 1 23 469 492 469 492 0.95 8 11 0.00018 0.0079 16.5 0.2 1 23 498 521 498 521 0.95 9 11 6.3e-05 0.0027 17.9 0.1 1 23 616 638 616 638 0.97 10 11 0.0031 0.14 12.6 6.6 1 23 755 777 755 777 0.96 11 11 0.01 0.45 10.9 5.2 5 23 790 808 782 808 0.92
Sequence Information
- Coding Sequence
- ATGGCTGCTCAAAGTAATCCACCGAGTTTTGGATACACCTGGGGCTTCGCGGACAATTCTCGAGCTGACTCGGTAGTGGAAATATCACCAAATATCAACTACACCGTCAGTGAAGCGATGCCATACCTCCAGTTAACCGATGCTGGCAGCATCACCGTCCAGAAGGATGTCAAAGGAGCCATAACTCATACCAACAAGGGAGTTGTTCGTCGGATGTTTGTAGTAAATGAACCGTTTACTCAAGCTTCATCCCAAAGCAATTTCCGTGTGATCACAACCGGCAGCGCCGCGTCGACAATTTCTCAGCATAAGAAACAAGATATCCTAAGTATGGCctgtgataattttttttttgatcgcAATGATAACAAGTCCACAACAATGAGTCTGATCCAATCAGACCAATCTAATCATTCTCTAGCCGCAAATGGAATTCTGGACACGAAAACCGTTCTCACAACTGGTGGCAAAACGTCATTCGTCAGTAGTCCAATCGGCACACTGCAATTGACTGTAGAAGAATGTAACGAAATAATGATGAAACGGGCTGTGGCCGCGgcccaacaacaacaacagcagcaacaacaacaacaacagcaacaagcCCATCATCAGAATCAACATCATACCACAATTACCACCACTGACGGTCATCATACAGattttctaaTCCGTGAAGGCATTTCGGTGCAAGTGCAAAAAGTAATACAAGGTCTAGAAGAGGCCGACGATTCGCAGCAGGAAACACATTGTAAATTGGAACCGAACATGGACATTGATCCGAAGGAGGAAGTATTGCATCAGGTGGAAGATGACCAGGAGCATGAGCTCGAATTAGAACTGGACCAAGATCACGAAATGGAAAGTAAGCATGATCCGGATGCTCCGCCGAAAGAACGGCCGTACTCGTGCGAAGAATGTGGCAAATCGTTTTTGCTGAAACACCATTTGACCACTCATGCCCGAGTTCATACGGGTGAACGTCCACATGTCTGTGTGCACTGCGGAAAAAGTTTTGCTCATAAACACTGCCTAAACACCCACTTGTTGCTTCATTCGACGGATCGTCCATATCAATGCAGTGAATGCAAGAAAAGTTTTACGTTGAAGCATCACCTGCTGACCCATTCTCGGGTACACAGTCGAGAACGTCCATTCGTTTGTCAGGAGTGTGGAAGAGCTTTCCCACTGAAGCGTCACTTGGTCACGCATAGCAAGTTCCATGCCGGAGAACGTCCATACGTTTGCGAAGAGTGTGGCGAGAGTTTTGCTCAAGAGAATCACTTGGTAATGCACTCTCGATTCCACGGATCGGTCAATCCTTTCGTGTGCGGTGATTGTGGTGCAACGTTCCCGCGGAAATTTCAATTGGTCAATCATGGTCGAATACATGGACGTGTGCCACACGCCTGTACTGTTTGCGGTAAAGAATTTTTGCAGAAACGAACACTGGTGGCGCATATGAGATTGATGCATACCGGAGATCATGCGTATCCTTGTACAGCATGCGGAGAGGGATTCCGTACTAAAGCTGAATTGAACCAGCACAACAGGCAAACTCACGGAGGAGTTAATCCTAATTCGGCGAACACAACTATCGTGGTTGCGtcacagcaacaacaacagcagcagcatcAAGGAGCTCAGATTCAAGTGGTTCACACAACGTCTGAATCCCAACATATTGTTCAGCACGTTCAACAGCAGAGCCAACATCAACAACAGGCTCAGCAACAGCAGAATCAACACCATCATCAGCAACAGACGGTTACCGTGGTCAGTAGTCAACCGAATAATGGAATTGTAACAATTAGCACACCAGAAACGTCGCCGACACGGCCGCAATATGCTTGCCGAGAATGTGGCCAAGCATTTAATAGTCGAGAAGCTTTGGCACTTCATTTACGATTGCACACTGGCGACAAGAGTCTTATGACCGATCTTTGTGCGCTGACAGCAGCGTTGCCCGGACATTTTTTGAGTACAACCAATTTACAACAAGGCACTGTACTGACAAGCAACCACTCAGTGGTACAACAGACGCCCGTTCCGGTTCAAATCATATCGACGGGACAAGTTATTCAACAAGGAAACATCGTACAAAGTTCACCGTCACAGGGACAAACTATTCAAGTACAACAAGTGCAAccacagcagcagcagcaacaaCAACAGCatcaacagcagcagcaacaacaacagcaacctCAACAGCAAACAACGATCGTTTTACCAGTTACGCCACAGCAAAAGCCGAAGACCCACTTCTGCACCAGCTGTGGGAAAGGATTCGCATCCAAGCACGGCCTCTTGCAGCATCATCGTCGTCATCCCAACGGCGGTTGCACGTTGCGAACGCACGTTTGCGAATGTGGTAAAGCTTTCTTCCAGAAGAATCATTTAATGTTGCACCAGCGTCAACACTTGGAGACCAAACCAGTTATTAtccaacaacagcagcagGATAACATTCAACAGCAAACCGTTCAGCAGCAACAAGTCgtacaacagcagcagcagcagcagcagcaacaacaacagcaattGCAGACGCAACAGCAGGCCCAGCAGCAGGCCCAGAATCAACAGAACCAACACACGATGACGCGTGAAGTATTGATCGGCAATCAACCGGTCCATGTGCAAGTGTTGCAAGGTAACACCGCCCAGGTGATCAAATACGAAATCAACATACCACAAGAAAGCGGACAGGGTATAGAGTGA
- Protein Sequence
- MAAQSNPPSFGYTWGFADNSRADSVVEISPNINYTVSEAMPYLQLTDAGSITVQKDVKGAITHTNKGVVRRMFVVNEPFTQASSQSNFRVITTGSAASTISQHKKQDILSMACDNFFFDRNDNKSTTMSLIQSDQSNHSLAANGILDTKTVLTTGGKTSFVSSPIGTLQLTVEECNEIMMKRAVAAAQQQQQQQQQQQQQQAHHQNQHHTTITTTDGHHTDFLIREGISVQVQKVIQGLEEADDSQQETHCKLEPNMDIDPKEEVLHQVEDDQEHELELELDQDHEMESKHDPDAPPKERPYSCEECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLNTHLLLHSTDRPYQCSECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLVMHSRFHGSVNPFVCGDCGATFPRKFQLVNHGRIHGRVPHACTVCGKEFLQKRTLVAHMRLMHTGDHAYPCTACGEGFRTKAELNQHNRQTHGGVNPNSANTTIVVASQQQQQQQHQGAQIQVVHTTSESQHIVQHVQQQSQHQQQAQQQQNQHHHQQQTVTVVSSQPNNGIVTISTPETSPTRPQYACRECGQAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTTNLQQGTVLTSNHSVVQQTPVPVQIISTGQVIQQGNIVQSSPSQGQTIQVQQVQPQQQQQQQQHQQQQQQQQQPQQQTTIVLPVTPQQKPKTHFCTSCGKGFASKHGLLQHHRRHPNGGCTLRTHVCECGKAFFQKNHLMLHQRQHLETKPVIIQQQQQDNIQQQTVQQQQVVQQQQQQQQQQQQQLQTQQQAQQQAQNQQNQHTMTREVLIGNQPVHVQVLQGNTAQVIKYEINIPQESGQGIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00246603; iTF_01266219;
- 90% Identity
- iTF_00246603;
- 80% Identity
- -