Phyg035891.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- -
- Assembly
- GCA_029228625.1
- Location
- CM055406.1:22007888-22015082[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.34 42 6.5 0.7 1 20 230 251 230 255 0.90 2 14 0.00024 0.029 16.4 0.5 2 23 261 282 260 282 0.97 3 14 7.5 9.2e+02 2.2 6.4 3 23 287 308 286 308 0.92 4 14 6.4e-06 0.00079 21.3 1.7 1 23 315 338 315 338 0.97 5 14 5.1e-05 0.0062 18.5 6.2 2 23 345 366 344 366 0.97 6 14 0.0011 0.13 14.3 4.4 1 23 373 395 373 395 0.98 7 14 5.6e-05 0.0069 18.4 0.7 1 23 401 423 401 423 0.96 8 14 0.0088 1.1 11.5 0.5 2 23 443 465 442 465 0.95 9 14 0.00012 0.015 17.3 3.1 2 23 480 501 479 501 0.97 10 14 0.00055 0.067 15.3 0.6 1 23 504 526 504 526 0.98 11 14 2.5e-05 0.003 19.5 0.9 1 23 533 556 533 556 0.92 12 14 0.0079 0.97 11.6 3.6 1 23 562 585 562 586 0.94 13 14 2.7e-06 0.00033 22.5 3.5 1 23 591 613 591 613 0.98 14 14 0.0012 0.15 14.2 2.2 1 21 619 639 619 640 0.95
Sequence Information
- Coding Sequence
- ATGCGACGGATGAAACATGCTGAATTGCTCAAATCAAATATTCCACAATTATACGAGGATGCGACGACTTACAAGCTCGACATAAACGATGAATACCCTGAACTAATTTGTTCGAAATGTGAGAAAAACTTGCAACTGGCAGCGAAGATACGTAAAGACTTTTTGAAAGTTGATCGGTTTTGGCGAATGTTCCTCACAAATCACAGCAAATACAATCCACTGCCGTTCGATCAGCTAGCTCCAATCCAATCGCCAGCTCCAATCCTTGTCGATAATAACAGCAAAATTGACCAAATCGTATCACTTAGTCATAATGATGTCGGAGTGCAAACATCGGAAAcaacattttcatacaaatcacACCTCATCACGAATGAGCTGCCTTTGCAGGAAGTGAAGGGAACATTTACCGATCTACACATCGAGGAAGTTAAAATAGAGTCATACGAAGTGTACGAAGATGATGTTAAAAGCGAAATAGGTGATAGCAACATTCAATTCGGCGAGAgtaatcaaaataatttcaaaaatgatgAATTGGGTGAGGATACTAAAGATCCGGCGATGCAGAATCATAGTAGAAATGTGAATAATCCTGACATTTGCATGAAAAGGAAATCGACAAGACGATATCCAAAAGATAGAAATATTAACGGAGTCGATCCAATAAAaggcgaagaaaagtcttttaAATGTCTGGACCAAAAATGTGATGAAGAATTTATAGAGCTAAGCGACTTACATCAACATTCTTTTGATGCACACGGAACAAGTCAAATGTCCTGTGACTACTGCCTTAAAATATTTACGGAAAAAGGTGATTTAAGACTGCACGTGAAAACACACATAGAAAAATATTGTAGCTGCTGTAAACGGCATTTTTCAACGATATCACGTTGGAAAACCCATATGAAAGAGAACCATGATGGTGGTGataaaacatttaaatgtgaaatATGCGACAAAACATTGAAGAATTCCGATTCGTATAAAAAGCACATGACAATAACTCATTCCGGAAATCAAAATTTGGTTTGTCACATTTGTGGGAAAACTTGCAAAAATTCGCAGTACCTTCATGTCCATTTGCGCACCCATACGGAAAAggaaaaactattcaaatgcTCGTACTGTGACAAAAAGTTTAAGCTGAAGTACTCGAAGAAATTGCATGAGCGCGTGCACACCGGAGAGAGACCGTACATGTGTGATACATGTGGATTTTCATTCACTCAGCGTGGCCTATTGCTCAGACACAAAGAGCTTCACAACaaaccgaaaaaaaagaaagttcCACGAATCATCAACAAACAGCACGGTAATGTGAAGTGCGAACTCTGTGATTCGGTATTTTCCAACATTGTAAACATGAAGAGCCATCTTACCAAAAAGCATAAGCATGTTGGCTCAACAATATGGGAAATGAAACTAAATACAACTTGCATGAAGTGCCATAAAACATTCACCGACGTAGAAGAATTGCAAGCGCACAAGAAAACACACTTAGAATTCGTTTGTAATATTTGCAAATCTCGATACAGTAACGAACGATCATTGGAACAACACATAGCTAAACATGCGGATAAAGATCGACCTTTTAAATGTGAAGAATGCGGTGCCGCTTATATACGGAAATCGCATCTACAGCAGCATTACACCGGAATGCACACGAAAATTCGACCACATATTTGTATGTTCTGCAGTAAGGCATTCGCACAAACGTTCCAACTGAAAACTCACATAAAACTGGTACACCACAAAGAGAAACCTTACCGTTGCAAGCATTGCGAACGTGCCTTCTCCACGTCGGTTCAGTTGAATCAACATATGCAATACCACACGGGAAATTTTCGTTATCAATGCATCGTATGCGAAAAATGTTTCATCACACATCAAGCACTGACCAAGCACATGCGAAACAGTAAATCGTGTCGCGGAAAATTGGCTGAAAGTCAAGCCACTAAGAAGCCAATACCACCACCAGAAATACCGTTGGCACCGCCGAAAATTCAAGTTAAATTAGTGGAGGTGTCTGGTATTCCCGCTATGCAAGCAACAACCCATGCCACAACAATCGATTCAATTGAAACATCGGCATCAACAGTACAAACGATTTCGGACAATAGTCATCAAACGGTGATGTCATTGGATCAGGTTCGCAGTTTGGAGACTTTACAGTCGATACCGGCTATCAGTCCCCTGATCACAATAACTTCCTTGTCTGGTATAACAACGATAACATCCGATTCTACTATTGAAGCAATCATGCCATTGATTGGTGAACCGAAAGATGTCGATCGATTTTACTGA
- Protein Sequence
- MRRMKHAELLKSNIPQLYEDATTYKLDINDEYPELICSKCEKNLQLAAKIRKDFLKVDRFWRMFLTNHSKYNPLPFDQLAPIQSPAPILVDNNSKIDQIVSLSHNDVGVQTSETTFSYKSHLITNELPLQEVKGTFTDLHIEEVKIESYEVYEDDVKSEIGDSNIQFGESNQNNFKNDELGEDTKDPAMQNHSRNVNNPDICMKRKSTRRYPKDRNINGVDPIKGEEKSFKCLDQKCDEEFIELSDLHQHSFDAHGTSQMSCDYCLKIFTEKGDLRLHVKTHIEKYCSCCKRHFSTISRWKTHMKENHDGGDKTFKCEICDKTLKNSDSYKKHMTITHSGNQNLVCHICGKTCKNSQYLHVHLRTHTEKEKLFKCSYCDKKFKLKYSKKLHERVHTGERPYMCDTCGFSFTQRGLLLRHKELHNKPKKKKVPRIINKQHGNVKCELCDSVFSNIVNMKSHLTKKHKHVGSTIWEMKLNTTCMKCHKTFTDVEELQAHKKTHLEFVCNICKSRYSNERSLEQHIAKHADKDRPFKCEECGAAYIRKSHLQQHYTGMHTKIRPHICMFCSKAFAQTFQLKTHIKLVHHKEKPYRCKHCERAFSTSVQLNQHMQYHTGNFRYQCIVCEKCFITHQALTKHMRNSKSCRGKLAESQATKKPIPPPEIPLAPPKIQVKLVEVSGIPAMQATTHATTIDSIETSASTVQTISDNSHQTVMSLDQVRSLETLQSIPAISPLITITSLSGITTITSDSTIEAIMPLIGEPKDVDRFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00245676;
- 90% Identity
- -
- 80% Identity
- -