Bcop010359.1
Basic Information
- Insect
- Bradysia coprophila
- Gene Symbol
- -
- Assembly
- GCA_014529535.1
- Location
- NW:42487-47823[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.77 33 5.1 1.4 1 22 270 293 270 295 0.90 2 14 9.2e-05 0.004 17.4 0.9 2 23 301 322 300 322 0.97 3 14 0.0036 0.16 12.4 2.6 2 23 326 348 325 348 0.95 4 14 1.9e-05 0.00082 19.6 1.6 1 23 355 378 355 378 0.97 5 14 4.4e-05 0.0019 18.4 6.2 2 23 385 406 384 406 0.97 6 14 0.00093 0.04 14.2 4.4 1 23 413 435 413 435 0.98 7 14 2.8e-05 0.0012 19.0 0.6 1 23 441 463 441 463 0.96 8 14 0.0075 0.32 11.4 0.5 2 23 483 505 482 505 0.95 9 14 0.00011 0.0046 17.2 3.1 2 23 520 541 519 541 0.97 10 14 0.0013 0.054 13.8 0.5 1 23 544 566 544 566 0.98 11 14 2.2e-05 0.00094 19.4 0.9 1 23 573 596 573 596 0.92 12 14 0.0026 0.11 12.8 3.7 1 23 602 625 602 626 0.94 13 14 2.3e-06 9.8e-05 22.5 3.5 1 23 631 653 631 653 0.98 14 14 0.001 0.045 14.1 2.2 1 21 659 679 659 680 0.95
Sequence Information
- Coding Sequence
- ATGGATCAATACTACATACGAAATGAACATCTCGTGCTTCGTAACACATATGATCTATGCCGATTTTGTCTGTGCGTTCGGTTGAATATGCGACGGGTACAACATGCTGATTTACAAAAAACCAATATTCCACAACTATACGAAGACGCAACCACACAAAAGCTGGACATCAGCGACGAATATCCGGAACTCATTTGTCCGAAATGTGAGAAAAACATGCAACTGGCAGCAAAGATACGGAAAGACTTTTTGAAAGTCGATCAATTTTGGCGCACATTCCTTACCAACCATAGCAAATACAATCCAATACCATTAGATCAGCTGGCTCCAATCGAATCACCAGCGCCAGTTCGTGTCGTCGATGATAACAGCAGCTACCTCCAAACCATCAATCACAATGTTCCAGTGAATGCAATCAATCCAAAAAATGAAGTCGGAGTACAGACACTAGACGTTAAAAATGTCCACGAAAAATTCCATTCGAACGCGAATATCGTCCCGTACCGGGAAGCGAACGGTACGATAACCGATCTGTCTATCGAAGAAGTTAAAATCGAATCGTACGTGGTGTACGAGAATGTCAAATGTGAATTTGCCGATGACAAAAGCCAATTCGGTGACGGTAATAAATATTCGATGGATTCGGATGGACAGGCGATCGATGAAGATTCCAAAGATCCGACGATACAAAGTGATGATAAAAATGTGAATGCCAATGATGCCTGGATGAAACGACGATCGGGTAGAAAGTATCCGAAAAATCGAAACATCCACGGGACTAATCCAATCAAAGGAGAAAAAATGCTGTTCAAATGCCCGGAGAATGAATGTAAACAAGAATGCGATGAATTGAGCGACTTACATCAGCATTCATTGGACGCACATGCATTGAACCAAATGTCCTGCGACTACTGCcttaaaatatttacgaaaaaaggTGATTTAAGACTGCACGTGAAAACCCACATAGAAAAGTACTGTAGCTattgtaaaagaaatttttccacaatTTCCCGGTGGAAAACGCATATGAAGGAGAACCACGATGGCGGCAATAAAACGTTTAAATGTGAGATTTGCGAGAAAACGCTGAAAAACTCGGACTCGTACAAAAAGCATATGACGATTACTCACTCAGGGAATCAGAATTTAGTGTGTCATATCTGTGGAAAGACCTGCAAAAACTCACAGTATTTGCATGTCCATTTGCGCACCCACACGGAAAAGGAAAAGCTGTTCAAGTGTTCGTACTGTGACAAGAAATTTAAGCTGAAATACTCAAAGAAATTGCACGAACGAGTTCACACTGGCGAGAGACCGTACATGTGTGACACATGTGGATTTTCATTTACCCAGCGTGGTCTGTTGATCAGACACAAAGAGCTGCACAATAAgccaaaaaagaagaaacttCCGCGAATCATAAACAAACAGCACGGCAATGTCAAATGCGAATTGTGCGATTCGGTTTTCTCGAACATTGTCAACATGAAGAGTCACTTGACCAAAAAGCATAAGCACGTTGGATCGACAATATGGGAAATGAAGCTGAACACCACTTGCATGAAGTGTCACAAAACCTTTACCGACGTGGAGGAGTTACAGGCGCATAAGAAAACGCATTTGGAATTTGTGTGCAATATCTGCAAGTCTCGGTACAGCAATGTCAGGTCACTGGAACAGCACATAGCCAAACATGCGGATAAGGATAGACCGTTCAAGTGTGATGAATGCGGTGCCGCTTACATCCGAAAATCTCATCTACAGCAACACTACACCGGTATGCATACGAAAATTCGGCCGCATATTTGTATGTTCTGTAACAAGGCGTTTGCTCAAACATTTCAACTGAAAACCCACATAAAACTTGTCCATCACAAGGAGAAGCCCTACCGTTGCAAGCACTGCGAGCGAGCGTTTTCCACTTCCGTTCAGCTCAATCAACACATGCAATACCATACCGGCAATTTCCGATATCAGTGCATCGTGTGCGAAAAGTGTTTCATAACACACCAGGCACTCACCAAGCACATGCGAAACAGTAAATCGTGTCGCGGAAAATTGGCCGAAAGTCAGGCCACAAAGAAGCCGATACCGCCACCAGAAATACCATTAGCACCTCCCGAAATTCAAGTGAAACCAATTGTTGTGTCCGGTATACCTGCGATGCAACCGGTAACCGATGCATCGTCCATTGACTCAATGGACACAACATCGATAGTACAGACGATATCGGATAGTAATCACCACACCGTGATGTCATTGGATCAGATACGGAGTTTGGAAACGTTACAAACGCTGCCGGTTATGAATCCGATCATAACCATAACTTCGATGTCTGGCATGACGACGATGTCAGCTGATTCGACAATTCAAGCAATAATGCCATTAATTGGTGAGCCAAAGGATGTGGATCGATTTTACTGA
- Protein Sequence
- MDQYYIRNEHLVLRNTYDLCRFCLCVRLNMRRVQHADLQKTNIPQLYEDATTQKLDISDEYPELICPKCEKNMQLAAKIRKDFLKVDQFWRTFLTNHSKYNPIPLDQLAPIESPAPVRVVDDNSSYLQTINHNVPVNAINPKNEVGVQTLDVKNVHEKFHSNANIVPYREANGTITDLSIEEVKIESYVVYENVKCEFADDKSQFGDGNKYSMDSDGQAIDEDSKDPTIQSDDKNVNANDAWMKRRSGRKYPKNRNIHGTNPIKGEKMLFKCPENECKQECDELSDLHQHSLDAHALNQMSCDYCLKIFTKKGDLRLHVKTHIEKYCSYCKRNFSTISRWKTHMKENHDGGNKTFKCEICEKTLKNSDSYKKHMTITHSGNQNLVCHICGKTCKNSQYLHVHLRTHTEKEKLFKCSYCDKKFKLKYSKKLHERVHTGERPYMCDTCGFSFTQRGLLIRHKELHNKPKKKKLPRIINKQHGNVKCELCDSVFSNIVNMKSHLTKKHKHVGSTIWEMKLNTTCMKCHKTFTDVEELQAHKKTHLEFVCNICKSRYSNVRSLEQHIAKHADKDRPFKCDECGAAYIRKSHLQQHYTGMHTKIRPHICMFCNKAFAQTFQLKTHIKLVHHKEKPYRCKHCERAFSTSVQLNQHMQYHTGNFRYQCIVCEKCFITHQALTKHMRNSKSCRGKLAESQATKKPIPPPEIPLAPPEIQVKPIVVSGIPAMQPVTDASSIDSMDTTSIVQTISDSNHHTVMSLDQIRSLETLQTLPVMNPIITITSMSGMTTMSADSTIQAIMPLIGEPKDVDRFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01266206;
- 90% Identity
- -
- 80% Identity
- -