Phyg005720.1
Basic Information
- Insect
- Pseudolycoriella hygida
- Gene Symbol
- T
- Assembly
- GCA_029228625.1
- Location
- CM055403.1:66903952-66906677[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-10 1.6e-06 29.2 0.0 3 71 11 71 9 74 0.83 2 2 0.45 2.1e+03 -0.0 0.0 33 47 503 517 499 522 0.85
Sequence Information
- Coding Sequence
- ATGAATCCGatcgaaaatgataaaaaagatACAATTCACAATCTTCGTGTGCCATTTGAACATGGTTGGACACGAGAATTGGTGTATTCATcgaataatatgaaaaatgcCGAAGTGTACTATGTGTGTCCAGCGGGAAACAGAATGCGAACTAAAAGAGAAGTGTTCCAGAACTTAGGAAATTTAAACATTTGGAACTTTTCGTTCGCAAAGCGTCCTCTCGGCTGCAATGGAGAGATCATTCGAACTGCTTCCGCGAGGGGTTGTCGGGACCTTGAAACTGCGTTTAAAATGCAAAAAGCGAGTGTGGACGTTGGAAATTCTTCTGCACAACAGTCAATCTGTTCTCTAATAACGGAAGCAACGGACAATAGCTCAGAGAACTACACACACATGGACGAAGATCAATTAAGGCAAGAAATCGCTAAAAAAGATGACCTCATAAAAAATTTGCGAATTTGCCTGCTTCGAAATGAATCAGAGATGAAAGCGCTACAGACCCAAATTAAGACTAAGCCAAATCTATCCCATGAAGAAACCTTAAAAACTATTGAACTCTTGTTTCCAATGCTgtcgaaaaatcaaattaacatCATGACAAATCAAAAGAAAAGAGTTAATTGGACCTGCGAAGAAATATCCACTGGCTTTGCCTTAAGTTTCTTTAGCAGAAGAGGCTACTGTTATCTGATTCATAAGCTACATTATCCACTCCCGTCAATCAGGACGCTACAGTTGTGGAGCCAGAAAATGACAATCGGTCCTGGAATTATAGAAGATAGTTTCGTTGTAATGGCAGCTATGCGAAGTTCATTGACTGAAGGTGAATCTCAGGTCATCTTAGCGTTCGATGAAATGAAGTGCAAAGAACGTTACGAAGTAAATAAAACACTTGATTGCGTAATGGGTCCGCATTCTCAAATGCAAGTGGCTATGGTTAGAGGTCTTTTCTACAAGTTCAAACAGCCAATTTTTGTAGACTTCGACATGAAAATGTCAGTCGAATTGTTGAATAGTCTCATCAAACGTTTGTATGCGATTAAGTTTAATGTCGTTGGTATTGTTAATGATAATGGTGGAGGGAATGTTGGCTTATGGACCAAATGCAACGTTAACTACGAGAGGCCATACATTTCTCATCCCATAACtaaagacaaaatttttatgttcTCGGATGCTCCACATCTCTTGAAGTTATTAAGAAATTGGTTTATAGATGGGGGATTGCTTTTATCAGATGGAACTGAATTGAACCAATATCGAATTCGCCAACTTTTGGAGAGCAATACAGAAATTAGTCCGTTGTATAAACTGAGTTTACATCACCTCGAAGTCAAAGGTGCAGAGCGTCAATGCGTGAGATTGGCTTCTGAATTGTTTTCCCACACTGTTGCTGAAAGCGTGAGAAGAAATTTTCCTAAAGATGCTGTTGCACACAAACTTGCCGATTTCATTGAGCTCGTCAATAACTGGTTTGACATAATGAATTCTTACACGCCAAATGGCATTGCATACAAAGCGCCCTATGGAAAGGACTTAGAAGAGCAAAATCGGGTGTTAGACGAAATGTACTGGACAATTAAAACCATGAAGTGTTTCAACAAAAAAGGAGAGTTGCAAGAATCGctgcaaatttcccaaaaaggGATACTGATGTCAATTACATCGATCAAAGGTTTGCGGAAGGAAATggaggaaaaatttaaattccgaTTTATTCTAACACATCGAACGAATCAagatttcgaagaaaattttttttctcaaattagGGGTAGAAATGGACCGATAGATCATCCATCGCCTGTTGAATGTTTGTATACTATAAAAGCCATAATTCTTGGAAAGAATCCTGGCATAGGTCGCCATTTACACTCGAATACTATTGAACAAGACCCGGAAGAATATGTGTCGGCCACATTCATGCGTCACTTGTCTCGTGATGAAAATATTGACGGAATATGTGAAAGAAATGATGAGATTGGTAACATTGAGCTCCTAGAAAACGATTCCGACGACGATATTCGAGAAAAGATAGCGAACGATATGACCGAAGATTTCCTTGCTGATTACACCAACGATATAAAAGTGCTACCAAACGATTCAAATGGATTGGAAACGTGTATACGTCTGGAGATAGCTTATGGCACACTCCACatctaa
- Protein Sequence
- MNPIENDKKDTIHNLRVPFEHGWTRELVYSSNNMKNAEVYYVCPAGNRMRTKREVFQNLGNLNIWNFSFAKRPLGCNGEIIRTASARGCRDLETAFKMQKASVDVGNSSAQQSICSLITEATDNSSENYTHMDEDQLRQEIAKKDDLIKNLRICLLRNESEMKALQTQIKTKPNLSHEETLKTIELLFPMLSKNQINIMTNQKKRVNWTCEEISTGFALSFFSRRGYCYLIHKLHYPLPSIRTLQLWSQKMTIGPGIIEDSFVVMAAMRSSLTEGESQVILAFDEMKCKERYEVNKTLDCVMGPHSQMQVAMVRGLFYKFKQPIFVDFDMKMSVELLNSLIKRLYAIKFNVVGIVNDNGGGNVGLWTKCNVNYERPYISHPITKDKIFMFSDAPHLLKLLRNWFIDGGLLLSDGTELNQYRIRQLLESNTEISPLYKLSLHHLEVKGAERQCVRLASELFSHTVAESVRRNFPKDAVAHKLADFIELVNNWFDIMNSYTPNGIAYKAPYGKDLEEQNRVLDEMYWTIKTMKCFNKKGELQESLQISQKGILMSITSIKGLRKEMEEKFKFRFILTHRTNQDFEENFFSQIRGRNGPIDHPSPVECLYTIKAIILGKNPGIGRHLHSNTIEQDPEEYVSATFMRHLSRDENIDGICERNDEIGNIELLENDSDDDIREKIANDMTEDFLADYTNDIKVLPNDSNGLETCIRLEIAYGTLHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -