Basic Information

Insect: Pseudoips prasinana
Gene Symbol: ZIPIC
Assembly: GCA_951640165.1
Location: OX621247.1:35731880-35733280[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 5.5e-05 2 10.6 0.6 20 49 176 205 162 208 0.86

2 5 0.018 6.7e+02 2.5 0.3 21 44 237 260 229 267 0.84

3 5 0.71 2.6e+04 -2.6 0.1 26 44 270 288 260 291 0.63

4 5 9e-05 3.3 9.9 0.1 22 46 294 318 289 321 0.89

5 5 3.7e-06 0.14 14.3 0.1 18 48 371 401 359 404 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	5.5e-05	2	10.6	0.6	20	49	176	205	162	208	0.86
2	5	0.018	6.7e+02	2.5	0.3	21	44	237	260	229	267	0.84
3	5	0.71	2.6e+04	-2.6	0.1	26	44	270	288	260	291	0.63
4	5	9e-05	3.3	9.9	0.1	22	46	294	318	289	321	0.89
5	5	3.7e-06	0.14	14.3	0.1	18	48	371	401	359	404	0.91

Sequence Information

Coding Sequence: ATGGACACCAAGCAATGTAGGCTGTGTTGCAAAAACGAAGCGACTAtcgacatatttaaaaaaagacggGACGAAATTGAAATCTATGCTAAATTAACATACTGTTGTGCAAATATAATTGTAAAGGATGATGATGGACTGCCGAAGAATGTATGTGGTGCTTGTGAGCGAGAACTTTCAACTTGTTACCAATTTATACTTAAATGTGAAGAATCCGACAAGAAATTACGGTCGCAAATTATAGCAGCTGCCGAAGATTCTAAACAACAGTTGGAAATTAAAATCGAAGGGACCAGCAACAGTGACGATGAGCATCAGTATGAAGACCTTCTTAATGACGATATTACCCTTGAACAGTTACGACAAAGCTTAGCGATAAAATTAGAAAACTTTAATTCCTGTAttcaaaaaaaaagaacttataAAAAGAGAACCAAGTATAAAGCTGTTGAGTTATCTATTTGCTCTAAGTGTGGCAAACAATGCGCCAATCCTTCCAGTTTGGTAGCCCATATGAGATCACATACTGATGAGAGACCATTTTCATGTCCATCATGCGATAAAACTTATAAAGACTGTGGGGCTTTGAAGAGGCATGTGGAGAGGACGCATCTGCAGCACAGCAGGCAACGTAAATTCATCTGTGAAAACTGTGGCAAAGGATTCTTTACAAAGCATGATGTGAAGATCCACATGCGTACACATACTGGAGAAACCCCATATGCATGTCCGGAATGTTCATTAAGATTCACACAGATTAGTGCCCTTGTGAGACATAAAAAACGTCACACAGGTACAAAAGACCATGCTTGTTCCActtgtttaaaatgtttttgtaccaAAGAAGAACTTAAACATCACCTCACCGTACATTCCACTGAAAAGAACTTTTCTTGTACCATTTGTAATACTCCCTttaaataccaaaataatttGAGAAAGCATTTAAAACTGCATTTGGAACCTAATCGTTACATCTGTAATTATTGTGGGCGTACATTTGGTGTTaaaggaaatttaaaaaatcacatTAATAAGCTGCATTCAGAGAAATCAGGGTATTGTAATGTTTGTTCAAAAAGTGTATCAAACATAGAAGCTCATACATGGAGGCATTCAGGTGAAAGACCTTTGAAATGTGAATTATGTACAAGTAGCTTTTTTGACTCCAAAGCTTTAACTCGGCATTTAAACTTCAGGCATAAGAAAACTgacaaatttaaatgtcaaaTGGGGACTTGCACTATGGGATTTCCTTCACGCCAAATGCTGGATTACCATACAGTGAAGACACATACCACTATTGTTCCATTTCCATGTGATAGATGTACCAGAGCTTTTTATAGGAAGAATGACTTGGCAAGACATAAATTAGGCACTCATAAAGAAAAACTCATTTAG
Protein Sequence: MDTKQCRLCCKNEATIDIFKKRRDEIEIYAKLTYCCANIIVKDDDGLPKNVCGACERELSTCYQFILKCEESDKKLRSQIIAAAEDSKQQLEIKIEGTSNSDDEHQYEDLLNDDITLEQLRQSLAIKLENFNSCIQKKRTYKKRTKYKAVELSICSKCGKQCANPSSLVAHMRSHTDERPFSCPSCDKTYKDCGALKRHVERTHLQHSRQRKFICENCGKGFFTKHDVKIHMRTHTGETPYACPECSLRFTQISALVRHKKRHTGTKDHACSTCLKCFCTKEELKHHLTVHSTEKNFSCTICNTPFKYQNNLRKHLKLHLEPNRYICNYCGRTFGVKGNLKNHINKLHSEKSGYCNVCSKSVSNIEAHTWRHSGERPLKCELCTSSFFDSKALTRHLNFRHKKTDKFKCQMGTCTMGFPSRQMLDYHTVKTHTTIVPFPCDRCTRAFYRKNDLARHKLGTHKEKLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01265069;
90% Identity: iTF_01265069;
80% Identity: iTF_01265069;