Ppra052903.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621258.1:19227820-19243281[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00028 10 8.3 0.0 21 47 247 273 243 279 0.86 2 8 0.068 2.5e+03 0.6 0.0 21 48 275 302 271 307 0.81 3 8 0.0056 2.1e+02 4.1 0.1 21 44 303 326 286 330 0.88 4 8 6.1e-05 2.3 10.4 0.0 21 45 331 355 328 362 0.87 5 8 0.0068 2.5e+02 3.9 0.1 21 51 359 389 355 391 0.84 6 8 0.056 2.1e+03 0.9 0.2 21 43 387 409 382 413 0.81 7 8 0.00018 6.7 8.9 0.1 11 46 404 440 401 446 0.82 8 8 0.38 1.4e+04 -1.8 0.0 27 44 449 466 444 474 0.73
Sequence Information
- Coding Sequence
- atgctggcatcttttgactgtaagaatattcacgCCATACTCATTTCTGAATCATGGCTAAAGCCATGTCTTCCATCTACGCTATACTCACTCACCGGCTTCAATCTAATTAGAAATGATCGTGCGAGTGGTCATGGCAACTACCTCACGGATGAGAAGCTGTCCAATACACTGTCACTGTCATCAgtatatcaaataaatataattgatgaTGGTGATGCCATGGTGAAGGCGGAACCGGTCATTGAAGTTGAAATATTGAAAGCGGAGCTTAGTAAAgAACCTTCTCGAGATGCAGATCCTTTGGACTCTCGGTTGACTTGTAATCGAAAATCGCTGCACGCGAGTACAAGTTTTGAGTATGATGTTGAAGTCAAACCGGAAATTAAAGCCGAAGATTTTGACGGTGTTGAGCTGACTACGGACTTTGATGATAGTAAAGATTACTTGGATAGCAAATCTTATGCAGACAAGTCACCTGATCCCAAGGATGATGTGCATCTTCctagacataaaaataaaggagTTACCATTGGAAAGAAGAGATCCCACACCGGGAAGGAGAAGTCGGAGATTAAGAAAcgagCTGAGGGTAGCAGAaaaaagaagaaacaaaaaGGAAGCGATGGAATGAGAGCCAGTAGAAGAAAACCCGGTGTTAAGCCGTTCAAATGCGATGTCTGCCAAAGGAATTTCACCTACAAAACGTTGTTAATAAATCACATTCGTGTACACGAAGATGAACAACCTTTTAAGTGTGACAAATGTTTTCGCAGTTTCAGGACGAAGAATAGTTTGTTTAGACACCTTCGTACACACACTGGGGAAAAACCATATAAATGTGATGTTTGTAATAAGCGGTTTACCGTTGACAGCACTTTAAAGAAACATATACGTATCCACACGGGTGAAAAACCTTATAAATGTGATATTTGTCAAAAAAGCTTCAACCAACAGTCCGCTCTAAAGAGCCACATTTATACACACACTGGTGAGAAACCTTTCAAATGCTATGTTTGCGAAGCGAGCTTTAGCCAAACTAGTAATCTAAAAACGCACCTTCGTAAACATTCAGGGGAAAAACCTTATAAATGCGGTTTCTGTCAAAATACGTTCACACAACAGAGCTCTTTAGAGAAACACATTCGTATCCACACTGAGGAGAAACCGTATAAGTGCCATATTTGTCAAAAGAGTTTCACACAAAAAGGTACCATGAAGATACACATCCGTAACCACACGGGTGAAAAACCGTACCGATGTGACCTGTGCCATAGTAGTTTTAAAATGAAACGCGAATTGAACAGACACGCGCAAATACACGCGGGCGGCAAGTCCTTCAAATGTGACGTCTGTCAGAGCAGTTTCACTGATAGATCAAATTTTGTGCGTCATGTTCGGAAACACGAAGAATCTAGCCATGAACCGTTTCCAAAAGAATCGCCTTAA
- Protein Sequence
- MLASFDCKNIHAILISESWLKPCLPSTLYSLTGFNLIRNDRASGHGNYLTDEKLSNTLSLSSVYQINIIDDGDAMVKAEPVIEVEILKAELSKEPSRDADPLDSRLTCNRKSLHASTSFEYDVEVKPEIKAEDFDGVELTTDFDDSKDYLDSKSYADKSPDPKDDVHLPRHKNKGVTIGKKRSHTGKEKSEIKKRAEGSRKKKKQKGSDGMRASRRKPGVKPFKCDVCQRNFTYKTLLINHIRVHEDEQPFKCDKCFRSFRTKNSLFRHLRTHTGEKPYKCDVCNKRFTVDSTLKKHIRIHTGEKPYKCDICQKSFNQQSALKSHIYTHTGEKPFKCYVCEASFSQTSNLKTHLRKHSGEKPYKCGFCQNTFTQQSSLEKHIRIHTEEKPYKCHICQKSFTQKGTMKIHIRNHTGEKPYRCDLCHSSFKMKRELNRHAQIHAGGKSFKCDVCQSSFTDRSNFVRHVRKHEESSHEPFPKESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265039;
- 90% Identity
- iTF_01265039;
- 80% Identity
- iTF_01265039;