Ppra058842.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621261.1:20089960-20092293[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.5e-06 0.00089 21.5 4.2 1 23 8 31 8 31 0.95 2 20 0.0019 0.3 13.6 0.1 3 23 38 59 36 59 0.95 3 20 8.1e-06 0.0013 21.0 0.3 2 23 68 90 68 90 0.97 4 20 2.1e-05 0.0035 19.7 3.7 2 23 99 121 98 121 0.95 5 20 6.1e-05 0.0098 18.3 2.7 2 23 129 151 129 151 0.97 6 20 6.7e-06 0.0011 21.3 0.9 2 23 160 182 159 182 0.96 7 20 9.2e-07 0.00015 24.0 1.1 1 23 188 211 188 211 0.98 8 20 0.31 50 6.6 7.4 1 23 219 241 219 242 0.95 9 20 0.00067 0.11 15.0 0.5 1 23 253 276 253 276 0.97 10 20 0.0028 0.46 13.0 0.2 3 23 304 325 302 325 0.97 11 20 0.57 93 5.7 0.9 2 21 333 352 332 353 0.92 12 20 0.016 2.6 10.6 2.2 2 23 362 384 362 384 0.95 13 20 0.0081 1.3 11.6 4.1 1 23 404 427 404 427 0.97 14 20 0.00072 0.12 14.9 1.6 2 23 434 456 433 456 0.96 15 20 0.00021 0.034 16.5 2.5 2 23 463 485 463 485 0.94 16 20 0.065 11 8.7 3.8 1 23 491 514 491 514 0.95 17 20 0.08 13 8.4 4.1 2 23 522 544 522 544 0.95 18 20 8.6e-05 0.014 17.8 0.9 1 23 551 574 551 574 0.97 19 20 0.034 5.5 9.6 3.5 1 23 581 604 581 604 0.92 20 20 0.049 8 9.1 2.8 5 23 621 640 618 640 0.90
Sequence Information
- Coding Sequence
- ATGTATCAGAATACATTAGACTTCGTTTGCGACTACTGCTCAAGAACATTCACAAGAAAATACAACCTCCAAACACACATAGAAAATTGTCACATAAACTCGGCTACTAACTGCGAAATTTGCGGGCAGAATTTCGGCAGTCCCGCTGGTCTCCAACTCCATTACTCTCGGGGCCACAATAACTACGAGCAACCTTTCCCAGAATGCGACATATGTGGTCGTATCTTCAcgagaaaacaaaatattacatcTCACATGATCACTGTGCATCTGCAAGGGTTAGGCTACGACATACGCTGTAGACTCTGCCACAAAACGTTCACAACAGAACGCAATTTAAAACGCCATATTAACCAATTACACAATCCAGACGTTGAATACCCACGTTGTCACGAATGCAACAAAATCTTCAAAGGAAAACATTCCTTAATCGCCCACATACAATCAGTCCACAACGTCATTGACAAAGACCTAATTAAATGCCAGTTATGCGAAAAAGTATACACAAATAATAGAAACTTAAAACGACACATCGAAATGTATCATGGGGAGAAAGGCGAATTCAGATGTGACATTTGCCCCAAAGTCTACACGTCCAATCAGAGTTTGAGGCGACACGCTAGAACCAGGCATAGCACAGATGATCCTGACCAATACTGTTGCTCTGTATGTACAAAAACCATCACAGGCAGAGAAAACTATACCAGCCATTTAAAGCATCATCACCAACCGCAAATTGTGCACCAAATCTATGAGTTTGTTTGTGAAACTTGCAACAACAGCTTTGATGAGGAAAAAGAACTGCGACAGCACATAAAAAGGGAGCATGCTTTTGATGTTTTCTATAAGTATTGCAAGGAAAGTTTACTCAAACAATACGGCATGGAAACTGATAGGAGAGTTTACGGCTGCGAGTTTTGCGCTTACTCTTTCGGAACAGTATACGAGCTGAAAGATCACATGAGGATCTCCCACGACACAGAATACTCTCTATCGACTTGTAATGTGTGTTTCTACAAGTTTTTCAGTAAACAATCTATGGTTGAACACAAAAAAGTATGCATACCACCCATAGGCGTCAATTCGTGCAATCATTGCGACAAATTATTCACAGACATATCCAGCTTAGAGTTTCATACCAGGATATTTCATCCGCAAGCACAAATTGCCGATTCCAACATAACTTCTACCAATATGGACGATGATTCGTTTAAGTGTAGTGTCTGTGACCGGCTGTATTACAGTGACAGATCTTTAAAACACCACATGAAATTAAAACATACTACCGACGAAGAAATGCAGTGTAATTCTTGCGGGAAATTGTGCAGAAACAAGTATTATCTCGCCTCACACATCAAAATTGTCCATAACGACGAAACTTGGGCCCGATGCGAATACTGCCAGAAACAGTTTAAATCTAAACGCAATATTCGTCGCCATATCGAATACACCCATCTGGGAATGCAGAGACACAAATGCATCGAATGCGAAACGCTATTCAAAGAGAAAAGAAGTTTACGGAAACACGTCAGAACTAAACATCCAAATTCCAACATATTTCCACAGTGCCATATCTGTGAGAAACGTTTTGAGTCAGCAAAATCTTGTAAAATACATCTGAAATTAGTACATTCCTTCAACATGAACACGTTTCCTTGCCATCTGTGTTCTGTATCCTTCAACTCCAGCGAAGCTTTAACGATACACTTGCAAACAAAACATTTGGCTAAGGACGAAATTTACAAATGCGAGGAATGCAATTTAGTTTTCAAAGGGCAGGAGTCTTTTGATCACCACAATTCGATCTGCCACGTCAACTTAGTTCCTAATATAAGGCAGAAAGTTTTGCCGCGTTGCATACTGTGCATGAAAGACTTCAGTACGCGGAAAACGTTGAAGAGACACATAAAGAAGTTTCATGTGGATTTTGAGGTCAATGAGCTGGCGAACTTTGGCTCCAGGCGTAGAAACTTCAATGTTGATTGTGAGGATTGCATTAAGAAGTTCAGCGACGAAACTTATtacaatatgtatttaaaattgaaGCATTTGAAGGACTCTAAGATATTCAAATGCGAATTATGCCTCTGCTCCTATACAGTGCTGGAATTTGCTATACAAAGATACAAGGCGATGAATTCGGATGGGCAGAAAAGCAAGATGATATTAAGCGACTTGTGTACTGCGGAAATGAGTGGTGAAGAAGCTGAATATTCTGGGTTTGGGACTTTCCATGACATGTTGCCGGAAAGTACCACAAGCGACATTAAAGTAGAACCACCTGAAGATATTGTCTCGGAGAATGATGTAAAAATGGAGCCTGAATCTCCATGA
- Protein Sequence
- MYQNTLDFVCDYCSRTFTRKYNLQTHIENCHINSATNCEICGQNFGSPAGLQLHYSRGHNNYEQPFPECDICGRIFTRKQNITSHMITVHLQGLGYDIRCRLCHKTFTTERNLKRHINQLHNPDVEYPRCHECNKIFKGKHSLIAHIQSVHNVIDKDLIKCQLCEKVYTNNRNLKRHIEMYHGEKGEFRCDICPKVYTSNQSLRRHARTRHSTDDPDQYCCSVCTKTITGRENYTSHLKHHHQPQIVHQIYEFVCETCNNSFDEEKELRQHIKREHAFDVFYKYCKESLLKQYGMETDRRVYGCEFCAYSFGTVYELKDHMRISHDTEYSLSTCNVCFYKFFSKQSMVEHKKVCIPPIGVNSCNHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNMDDDSFKCSVCDRLYYSDRSLKHHMKLKHTTDEEMQCNSCGKLCRNKYYLASHIKIVHNDETWARCEYCQKQFKSKRNIRRHIEYTHLGMQRHKCIECETLFKEKRSLRKHVRTKHPNSNIFPQCHICEKRFESAKSCKIHLKLVHSFNMNTFPCHLCSVSFNSSEALTIHLQTKHLAKDEIYKCEECNLVFKGQESFDHHNSICHVNLVPNIRQKVLPRCILCMKDFSTRKTLKRHIKKFHVDFEVNELANFGSRRRNFNVDCEDCIKKFSDETYYNMYLKLKHLKDSKIFKCELCLCSYTVLEFAIQRYKAMNSDGQKSKMILSDLCTAEMSGEEAEYSGFGTFHDMLPESTTSDIKVEPPEDIVSENDVKMEPESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076794;
- 90% Identity
- -
- 80% Identity
- -