Nrev028650.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344859.2:17013348-17015687[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.8e-06 0.00035 21.8 4.0 1 23 8 31 8 31 0.95 2 20 0.0016 0.15 13.6 0.1 3 23 38 59 36 59 0.95 3 20 2e-05 0.0019 19.5 0.3 2 23 68 90 68 90 0.97 4 20 1e-05 0.00097 20.4 3.5 2 23 99 121 98 121 0.95 5 20 1.2e-05 0.0012 20.2 0.9 2 23 129 151 129 151 0.96 6 20 5.6e-06 0.00052 21.3 0.9 2 23 160 182 159 182 0.96 7 20 3.8e-07 3.6e-05 24.9 1.0 1 23 188 211 188 211 0.98 8 20 0.49 46 5.7 2.6 1 23 219 241 219 242 0.94 9 20 0.015 1.4 10.4 0.9 2 23 254 276 253 276 0.94 10 20 0.0058 0.55 11.8 4.3 1 23 302 325 302 325 0.97 11 20 1.6 1.5e+02 4.1 1.5 2 21 333 352 332 353 0.92 12 20 0.02 1.8 10.1 2.2 2 23 362 384 362 384 0.95 13 20 0.013 1.2 10.7 7.4 1 23 406 429 406 429 0.97 14 20 4.3e-05 0.0041 18.5 1.0 2 23 436 458 435 458 0.96 15 20 0.00011 0.01 17.2 2.0 2 23 465 487 465 487 0.94 16 20 0.0023 0.22 13.0 3.9 1 23 493 516 493 516 0.98 17 20 0.074 6.9 8.3 4.6 2 23 524 546 524 546 0.95 18 20 5.3e-05 0.0049 18.2 0.8 1 23 553 576 553 576 0.98 19 20 0.051 4.8 8.8 3.1 1 22 583 604 583 606 0.89 20 20 0.042 3.9 9.1 2.8 5 23 623 642 620 642 0.90
Sequence Information
- Coding Sequence
- ATGTACCAAAACCTACTAGACTTCGTCTGCGACTACTGCTCCAGATCGTTTACAAGGAAATACAACCTTCAAACCCACATCGAAAACTGTCATATTAACTCTGCCACCAATTGTGAAATTTGTGGACAAAACTTCGGTAGCCCAGCTGGTCTCCAACTCCATTATTCCCGAGGCCACAATAACTCTGAACAGCCGTTTCCAGAATGCGACTTATGCGGTCGTATCTTCACAAGGAAACAGAATATTACCTCCCATATGATTACGGTACATCTTCAAGGCTTAGGCTTTGATATTCGCTGCAGAATGTGCCATAAAACTTTTACAACGGAACGCAATTTGAAAAGACATATCAATCAGATTCATAATCCAGATGTTGAGTACCCTAGTTGCAATGAATGTAACAAGGTCTTCAAAGGGAAGCATTCTCTGATCGCTCATATACAATCAGTCCACAACATCAATGAGAAAGACTTGATAAAATGTCAATTATGCGAAAAAGTTTACACTAACAATAGGAACTTGAAACGACATATCGAAATGTATCATGGAGAGAAGGGTGAGTATAAATGTGAGATTTGTCCTAAAGTTTATACTTCGAATCAGAGTTTGAGGAGACATGCGAGAACAAGACACAGCACCGATGATCTGGACCAATTCATTTGTACGGTTTGCACGAAATTGATCACTGGAAGAGATAATTATGAAAGCCATGTACAACACCATCATCAACCGGAGACAGTGCATGAAATATGCGAGCTTGTATGCGAAACTTGTAGCCACAGTTTTGACGAAGAGAAGGAATTGAGACAGCATGTAAAACAGGAGCATTCATTTGATGTATTCTACAAATACTGCAAAGAAAGTTTGCTCAAACAATACGGTGTTGATAACGATAGGACCGTGTATTGTTGTGAGTTTTGCGCGTGTACTTTCAACTCTGTTTATGAGTTGAAAGACCATATGAGAGTCTCGCATGACACTGAGTACTCTCTCTCGACCTGCAACGTGTGCTTCAACAAGTTTTTTAGTAAACAATCTATGAAGGAACATAAAAAAGCTTGCATTCCACCACCAAACGTAAATTCTTGCAGTCACTGCGATAAACTGTTCACAGATATCTCCAGCTTAGAGTTCCATACTAGAATATTCCATCCGCAAGCTCAAATCGCCGATTCTAAAATAACTTCCACGAATATGGACGATGATAATGTTTCGTACAAATGTAAACACTGCGACCGCTTATATTATAGCGATAGATCTTTGAAACATCACATGAAACTAAAACATACGACCGATGAAGAGATGCAATGTAATATTTGCGGTAAATTGTGCAGCAATAAATATTATCTGGCATCTCACATTAAAATAGTCCATAGTAACGATTCTTGGGCTCGTTGCGAATACTGCCAAAAGGAGTTCAAATCCAAACGCAATATTCGACGGCATATCGAGTACACACATCTGGGTATGCAAAGACATAAGTGTGTTGAATGCGAAACGCTGTTTAAAGAGAAACGGAGTTTGCGTAAGCACGTTAGAACGAAACATCCAAATTCGAACATTTTCCCGCAATGCCATATCTGCCAAAAACGATTCGAGTCAGCGAAATcttgtaaaatacatttaaaattagttcaCTCTTTTAATATGAATACGTATCCATGTCATTTGTGTTCTGTATCCTTCAATTCGAGCGAAGCTTTAACGATACACTTGCAAACGAAACATTTAGCAGAAGACGAGATTTATAAATGTGAAGAATGCAATTTAGTTTTCAAAGGGCAAGAGGCGTTTGATCACCACAACTCACTGTGCCACGTGAATTTGATCCCTATTACGAAGCAGAAAGTGTCACCTCGATGTATACTGTGCATGAAAGACTTCAGTACGAGGAAAACTTTGAAACGTCATATCAAGAAGTTCCACAAAGACTTTGAAGTCACTGAACTGGCCACCTTTGGTTCGAGACGTAGGAGTTTTACCGTTGACTGTGAAGAATGCATCAAAAAGTTTAGCGATGAGACGTACTACAATATGTATCTGAAGTTAACACATATGAAAGAATCGAAGAtttttaaatgtgaaagttGTTTGTGCTCCTACACGGTCTTAGAGTTTGCTATTCAGAGGTACAAATTTGTCAACTCTGATGGGCAGAAGACGAAGATGATTATGAGTGAGTTGTGTACAACTGAAATGAGTGGTGAAGAGCCGGATTACTCAGAGTTTGGCAGGTTCCATGATATGATGCCGGAGAGTACGACGGGCGACATCAAGATAGAAACTGCTGATGATATTTTGTCggaaaatgatattaaaatggaaCCAGAATCACCTTAA
- Protein Sequence
- MYQNLLDFVCDYCSRSFTRKYNLQTHIENCHINSATNCEICGQNFGSPAGLQLHYSRGHNNSEQPFPECDLCGRIFTRKQNITSHMITVHLQGLGFDIRCRMCHKTFTTERNLKRHINQIHNPDVEYPSCNECNKVFKGKHSLIAHIQSVHNINEKDLIKCQLCEKVYTNNRNLKRHIEMYHGEKGEYKCEICPKVYTSNQSLRRHARTRHSTDDLDQFICTVCTKLITGRDNYESHVQHHHQPETVHEICELVCETCSHSFDEEKELRQHVKQEHSFDVFYKYCKESLLKQYGVDNDRTVYCCEFCACTFNSVYELKDHMRVSHDTEYSLSTCNVCFNKFFSKQSMKEHKKACIPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSKITSTNMDDDNVSYKCKHCDRLYYSDRSLKHHMKLKHTTDEEMQCNICGKLCSNKYYLASHIKIVHSNDSWARCEYCQKEFKSKRNIRRHIEYTHLGMQRHKCVECETLFKEKRSLRKHVRTKHPNSNIFPQCHICQKRFESAKSCKIHLKLVHSFNMNTYPCHLCSVSFNSSEALTIHLQTKHLAEDEIYKCEECNLVFKGQEAFDHHNSLCHVNLIPITKQKVSPRCILCMKDFSTRKTLKRHIKKFHKDFEVTELATFGSRRRSFTVDCEECIKKFSDETYYNMYLKLTHMKESKIFKCESCLCSYTVLEFAIQRYKFVNSDGQKTKMIMSELCTTEMSGEEPDYSEFGRFHDMMPESTTGDIKIETADDILSENDIKMEPESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265037;
- 90% Identity
- -
- 80% Identity
- -