Ppra042458.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621253.1:24473534-24490138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00022 0.035 16.5 4.8 1 21 172 192 172 194 0.95 2 18 0.00057 0.092 15.2 1.9 1 23 200 222 200 222 0.98 3 18 3.5e-06 0.00057 22.1 2.2 1 23 228 250 228 250 0.98 4 18 8.8e-06 0.0014 20.9 3.3 1 23 345 367 345 367 0.98 5 18 1.4e-05 0.0023 20.3 3.1 1 23 443 465 443 465 0.98 6 18 3.5e-06 0.00057 22.1 2.2 1 23 541 563 541 563 0.98 7 18 4.3e-05 0.007 18.7 2.6 1 23 596 618 596 618 0.97 8 18 3.5e-06 0.00057 22.1 2.2 1 23 694 716 694 716 0.98 9 18 3.5e-06 0.00057 22.1 2.2 1 23 792 814 792 814 0.98 10 18 4.3e-05 0.007 18.7 2.6 1 23 847 869 847 869 0.97 11 18 3.5e-06 0.00057 22.1 2.2 1 23 945 967 945 967 0.98 12 18 3.5e-06 0.00057 22.1 2.2 1 23 1043 1065 1043 1065 0.98 13 18 3.3e-06 0.00053 22.2 0.8 1 23 1071 1093 1071 1093 0.98 14 18 5.8e-05 0.0094 18.3 0.1 1 23 1099 1121 1099 1121 0.96 15 18 4.3e-06 0.00069 21.9 1.3 1 23 1127 1149 1127 1149 0.98 16 18 0.00044 0.072 15.5 2.8 1 23 1155 1177 1155 1177 0.98 17 18 0.0024 0.39 13.2 1.6 5 23 1186 1204 1184 1204 0.93 18 18 2e-05 0.0032 19.8 5.4 1 23 1210 1233 1210 1233 0.97
Sequence Information
- Coding Sequence
- ATGTTGTCTAATTGcactaaattaaagCCACACATAGAAGATGGATTACCGCGTTTAATTTGCAAAGAATGTAGCCGGCAACTAAAACGTACGTACGCCTTCAATATACAATGCGAGGAAAgcgaaaaacaattaaaatacctACTAGAACATCCAGAATTGTATAACCTCGGGAATAATGAGATAAAATGTAGCAGTGACGATATAAAATCTGAGGAAATTAGCAGTACTGTGAAAGAAGAAGATAGTGAATTGAATGGAGGAGAAACCTTGGATGAGAGGGTCAATGAACCAGAAGACATTAAACTTGAACCAGATCTGAATGGTGATGGTGATGCAAATGACAGCTGCTGGGATGCTGAGGATGATAATGTATTACTGGAAGAGCTCAAGATAAAGAAAGCAGAGGAACTTAGTGAATGTAATGAAGAGaaaccaaataaaaagaaaagaggtagaaagaaaaaagTTTACCTTGAAGGTGAACGTCCAGTGCCAGAGAGCAAGTTACCGCACCAGTGTGATATCTGTGGCAAGTTCCTGAGCACTAAGAGCAACCTTAAGGCGCACAAACGCTGTCATTCGGATCTACGACCCTATAGCTGCACCGAGTGTCCTGCTACGTTTAAAGGACACAGTGCACTATTCCAACACAAGAAGATGCATACAGGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGCAGAAGAAGCTCCACACAAGCGAGACACCGTATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCTTCAACCATATACGGATGCACAAAGGTTAGTACAATCTCTCTACAGCAGAAGAAGCTCCACACAAGCGAGACACCGTATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCTTCAACCATATACGGATGCACAAAGGTTAGTACAATCTCTCTACAGCAGAAGAAGCTCCACACAAGCGAGACACCGTATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCTTCAACCATATACGGATGCACAAAGTTCAGCCGCCGCACTGGACTCTTCAACCATATACGGATGCACAAAGGATAGTACAATCTCTCTACAGCAGAAGAAGCTCCACACAAGCGAGACACCGTATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTTAGTACAATCTCTCTACAGCAGAAGAAGCTGCACACTAGCGAGACACCATATCACTGCGAGTACTGCTCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTTAGTACACACTCTCTACAGCAGAAGAAGCTCCACACTAGCCAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTGAGTACACACTCTCTACAGCAGAAGAAGCTGCACACTAGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTGAGTACACACTCTCTACAGCAGAAGAAGCTGCACACTAGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCTTCAACCATATGGGGATGCACAAAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTTAGTACACACTCTCTACAGCAGAAGAAGCAGCACACTAGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTTAGTACACACTCTCTACAGCAGAAGAAGCAGCACACTAGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTTAGTACACACTCTCTACAGCAGAAGAAGCTCCACACTAGCCAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTGAGTACACACTCTCTACAGCAGAAGAAGCTGCACACTAGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTGAGTACACACTCTCTACAGCAGAAGAAGCTGCACACTAGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCTTCAACCATATGGGGATGCACAAAGTTCAGCCGCCGCACTGGACTCTTCAACCATATGGGGATGCACAAAGGTTAGTACAATCTCTCTACAGCAGAAGAAGCTGCACACTAGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTTAGTACACACTCTCTACAGCAGAAGAAGCTGCACACTAGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTTAGTACACACTCTCTACAGCAGAAGAAGCAGCACACTAGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGTTAGTACACACTCTCTACAGCAGAAGAAGCAGCACACTAGCGAGACACCATATCACTGCGAGTACTGCCCCAAGCAGTTCAGCCGCCGCACTGGACTCATCAACCATATACGGATGCACAAAGGGGAAAAACAATACAGTTGCGAGATATGCTTCAAGACATTTGTCCAGAGCGCGCAGCTGTCGATACACATGAAGAGGCACAAAGGAGACAAGCCATATCTATGTCAAGTTTGTGGGAAAGGGTTTCCAATAAAAGCAGAGCTGAAGGTGCACCAGCGGATCCACAACGGGGAGAAGCCTTACTCCTGTCACCTGTGCACGAAGACCTTCGCGACCTCCGGCAACTTGTCCATACATGTTAGAATACATAACCAAGAAATTAGATACAACTGCAAAGAATGTCAACGCGGCTTCGTAACCTGCAGCGCGTACAACGTACACTTAAAGCGTCACAAAGGACAACGCGACTATCACTGCGAATGTGGCAAGACATTCTACACTTCATCAGCTCTCAAACAGCACAAAGTCGTCCATACTGGCGAGAAAAAGTATCAATGCAAAATATGTGACCGAAAGTTCTCTCAAACTTCCCACCTCAGTAGACATTTTAAGAGAGACCACGCTAAACCGAACGCCCCTGTGCCTTCCTCAGATCAGTATAAAGTAGTCCTAGATGTTAATAAAGACGTTATTTGTATAATAGATAAGGTGATCTCAGTTGCGAATACTAACCCGGGTGTGAAGTGTGAAGGGTCATAG
- Protein Sequence
- MLSNCTKLKPHIEDGLPRLICKECSRQLKRTYAFNIQCEESEKQLKYLLEHPELYNLGNNEIKCSSDDIKSEEISSTVKEEDSELNGGETLDERVNEPEDIKLEPDLNGDGDANDSCWDAEDDNVLLEELKIKKAEELSECNEEKPNKKKRGRKKKVYLEGERPVPESKLPHQCDICGKFLSTKSNLKAHKRCHSDLRPYSCTECPATFKGHSALFQHKKMHTGETPYHCEYCPKQFSRRTGLINHIRMHKAEEAPHKRDTVSLRVLPQAVQPPHWTLQPYTDAQRLVQSLYSRRSSTQARHRITASTAPSSSAAALDSSTIYGCTKVSTISLQQKKLHTSETPYHCEYCPKQFSRRTGLFNHIRMHKVQPPHWTLQPYTDAQRIVQSLYSRRSSTQARHRITASTAPSSSAAALDSSTIYGCTKVSTISLQQKKLHTSETPYHCEYCSKQFSRRTGLINHIRMHKVQPPHWTHQPYTDAQRLVHTLYSRRSSTLARHHITASTAPSSSAAALDSSTIYGCTKVSTHSLQQKKLHTSETPYHCEYCPKQFSRRTGLINHIRMHKAAALDSSTIYGCTKVSTHSLQQKKLHTSETPYHCEYCPKQFSRRTGLFNHMGMHKVQPPHWTHQPYTDAQRLVHTLYSRRSSTLARHHITASTAPSSSAAALDSSTIYGCTKVSTHSLQQKKQHTSETPYHCEYCPKQFSRRTGLINHIRMHKVQPPHWTHQPYTDAQRLVHTLYSRRSSTLARHHITASTAPSSSAAALDSSTIYGCTKVSTHSLQQKKLHTSETPYHCEYCPKQFSRRTGLINHIRMHKAAALDSSTIYGCTKVSTHSLQQKKLHTSETPYHCEYCPKQFSRRTGLFNHMGMHKVQPPHWTLQPYGDAQRLVQSLYSRRSCTLARHHITASTAPSSSAAALDSSTIYGCTKVSTHSLQQKKLHTSETPYHCEYCPKQFSRRTGLINHIRMHKVQPPHWTHQPYTDAQRLVHTLYSRRSSTLARHHITASTAPSSSAAALDSSTIYGCTKVSTHSLQQKKQHTSETPYHCEYCPKQFSRRTGLINHIRMHKGEKQYSCEICFKTFVQSAQLSIHMKRHKGDKPYLCQVCGKGFPIKAELKVHQRIHNGEKPYSCHLCTKTFATSGNLSIHVRIHNQEIRYNCKECQRGFVTCSAYNVHLKRHKGQRDYHCECGKTFYTSSALKQHKVVHTGEKKYQCKICDRKFSQTSHLSRHFKRDHAKPNAPVPSSDQYKVVLDVNKDVICIIDKVISVANTNPGVKCEGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265000;
- 90% Identity
- iTF_01265000;
- 80% Identity
- iTF_01265000;